Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv3010c

Experiment: 7H9 with Rifampicin 0.00045 ug/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRv3009c and Rv3010c are separated by 29 nucleotidesRv3010c and Rv3011c are separated by 95 nucleotides Rv3009c: Rv3009c - Probable glutamyl-tRNA(GLN) amidotransferase (subunit B) GatB (Glu-ADT subunit B), at 3,367,264 to 3,368,793 Rv3009c Rv3010c: Rv3010c - Probable 6-phosphofructokinase PfkA (phosphohexokinase) (phosphofructokinase), at 3,368,823 to 3,369,854 Rv3010c Rv3011c: Rv3011c - Probable glutamyl-tRNA(GLN) amidotransferase (subunit A) GatA (Glu-ADT subunit A), at 3,369,950 to 3,371,434 Rv3011c Position (kb) 3368 3369 3370Strain fitness (log2 ratio) -2 -1 0 1at 3368.805 kb on + strandat 3368.806 kb on - strandat 3369.021 kb on - strand, within Rv3010cat 3369.105 kb on + strand, within Rv3010cat 3369.539 kb on + strand, within Rv3010cat 3369.539 kb on + strand, within Rv3010cat 3369.540 kb on - strand, within Rv3010cat 3369.540 kb on - strand, within Rv3010cat 3369.767 kb on - strandat 3369.783 kb on - strandat 3369.783 kb on - strandat 3369.951 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 7H9 with Rifampicin 0.00045 ug/mL
remove
3,368,805 + +0.3
3,368,806 - -0.8
3,369,021 - Rv3010c 0.19 -1.1
3,369,105 + Rv3010c 0.27 -0.6
3,369,539 + Rv3010c 0.69 +0.3
3,369,539 + Rv3010c 0.69 -0.0
3,369,540 - Rv3010c 0.69 -2.0
3,369,540 - Rv3010c 0.69 -0.6
3,369,767 - -0.8
3,369,783 - -0.9
3,369,783 - -0.1
3,369,951 + -0.2

Or see this region's nucleotide sequence