Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1982c

Experiment: 7H9 with Rifampicin 0.00045 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Rifampicin 0.00045 ug/mL
2,224,413	+		Rv1981c	0.20	+0.5
2,224,413	+		Rv1981c	0.20	-0.3
2,224,413	+		Rv1981c	0.20	-0.9
2,224,413	+		Rv1981c	0.20	-0.3
2,224,414	-		Rv1981c	0.20	-0.3
2,224,422	+		Rv1981c	0.21	-0.1
2,224,422	+		Rv1981c	0.21	-0.1
2,224,422	+		Rv1981c	0.21	-0.5
2,224,423	-		Rv1981c	0.21	-1.3
2,224,458	+		Rv1981c	0.25	+0.1
2,224,518	+		Rv1981c	0.31	+0.4
2,224,518	+		Rv1981c	0.31	-0.2
2,224,519	-		Rv1981c	0.31	-0.3
2,224,578	+		Rv1981c	0.37	+1.8
2,224,587	+		Rv1981c	0.38	-0.1
2,224,587	+		Rv1981c	0.38	+0.2
2,224,587	+		Rv1981c	0.38	-0.2
2,224,588	-		Rv1981c	0.38	-0.4
2,224,588	-		Rv1981c	0.38	-0.7
2,224,590	+		Rv1981c	0.38	-0.2
2,224,591	-		Rv1981c	0.38	+0.0
2,224,591	-		Rv1981c	0.38	-1.2
2,224,651	+		Rv1981c	0.44	+0.8
2,224,652	-		Rv1981c	0.45	-0.3
2,224,668	+		Rv1981c	0.46	-0.2
2,224,668	+		Rv1981c	0.46	-0.9
2,224,668	+		Rv1981c	0.46	-0.4
2,224,669	-		Rv1981c	0.46	-0.0
2,224,680	+		Rv1981c	0.47	-2.1
2,224,681	-		Rv1981c	0.48	-0.0
2,224,756	-		Rv1981c	0.55	-0.1
2,224,758	+		Rv1981c	0.56	+0.4
2,224,759	-		Rv1981c	0.56	+0.0
2,224,792	-		Rv1981c	0.59	-0.1
2,224,792	-		Rv1981c	0.59	-0.0
2,224,792	-		Rv1981c	0.59	+0.8
2,224,867	-		Rv1981c	0.67	-0.8
2,224,867	-		Rv1981c	0.67	+0.6
2,224,867	-		Rv1981c	0.67	-0.2
2,224,867	-		Rv1981c	0.67	+0.1
2,225,238	-				-0.3
2,225,238	-				-1.4
2,225,333	+				-0.4
2,225,333	+				-0.4
2,225,333	+				-0.3
2,225,334	-				-0.4
2,225,334	-				-0.8
2,225,334	-				+0.1
2,225,334	-				+1.8
2,225,334	-				+0.1
2,225,523	-		Rv1982c	0.26	-1.0
2,225,529	+		Rv1982c	0.28	-0.8
2,225,530	-		Rv1982c	0.28	-0.1
2,225,530	-		Rv1982c	0.28	-0.6
2,225,530	-		Rv1982c	0.28	-1.5
2,225,864	-				-0.8
2,226,137	+				+2.8
2,226,160	-				-0.4
2,226,163	+				-0.3
2,226,163	+				+0.1
2,226,163	+				-0.4
2,226,164	-				-0.4
2,226,164	-				+0.2
2,226,206	+				-0.5
2,226,305	+				-0.3
2,226,305	+				+0.3
2,226,305	+				-0.4
2,226,305	+				-0.9
2,226,305	+				-0.4
2,226,305	+				-0.4
2,226,305	+				+1.8
2,226,305	+				+1.8
2,226,306	-				-0.4
2,226,306	-				-0.0
2,226,306	-				-0.2
2,226,306	-				-1.1
2,226,306	-				-0.1
2,226,427	+		Rv1983	0.11	-0.6
2,226,428	-		Rv1983	0.11	-0.0
2,226,502	+		Rv1983	0.15	-1.0
2,226,503	-		Rv1983	0.15	-0.1
2,226,503	-		Rv1983	0.15	-0.2
2,226,667	+		Rv1983	0.25	-0.6
2,226,689	-		Rv1983	0.27	-1.0