Experiment: 7H9 with Rifampicin 0.00045 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0820 and Rv0821c are separated by 55 nucleotides Rv0821c and Rv0822c are separated by 57 nucleotides Rv0822c and Rv0823c are separated by 165 nucleotides
Rv0820: Rv0820 - Probable phosphate-transport ATP-binding protein ABC transporter PhoT, at 912,726 to 913,502
Rv0820
Rv0821c: Rv0821c - Probable phosphate-transport system transcriptional regulatory protein PhoY2, at 913,558 to 914,199
Rv0821c
Rv0822c: Rv0822c - Conserved protein, at 914,257 to 916,311
Rv0822c
Rv0823c: Rv0823c - Possible transcriptional regulatory protein, at 916,477 to 917,646
Rv0823c
Position (kb) 914
915
916
917 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 913.317 kb on + strand, within Rv0820 at 913.317 kb on + strand, within Rv0820 at 913.318 kb on - strand, within Rv0820 at 913.340 kb on + strand, within Rv0820 at 913.341 kb on - strand, within Rv0820 at 913.420 kb on + strand, within Rv0820 at 913.421 kb on - strand, within Rv0820 at 913.500 kb on + strand at 913.631 kb on + strand, within Rv0821c at 913.632 kb on - strand, within Rv0821c at 913.632 kb on - strand, within Rv0821c at 913.842 kb on - strand, within Rv0821c at 914.135 kb on - strand at 914.186 kb on + strand at 914.186 kb on + strand at 914.205 kb on - strand at 914.211 kb on + strand at 914.212 kb on - strand at 914.338 kb on + strand at 914.339 kb on - strand at 914.622 kb on + strand, within Rv0822c at 914.622 kb on + strand, within Rv0822c at 914.622 kb on + strand, within Rv0822c at 914.623 kb on - strand, within Rv0822c at 914.829 kb on + strand, within Rv0822c at 914.860 kb on + strand, within Rv0822c at 914.861 kb on - strand, within Rv0822c at 914.861 kb on - strand, within Rv0822c at 914.862 kb on + strand, within Rv0822c at 914.904 kb on + strand, within Rv0822c at 914.904 kb on + strand, within Rv0822c at 914.960 kb on + strand, within Rv0822c at 914.960 kb on + strand, within Rv0822c at 914.961 kb on - strand, within Rv0822c at 914.961 kb on - strand, within Rv0822c at 914.961 kb on - strand, within Rv0822c at 915.125 kb on + strand, within Rv0822c at 915.125 kb on + strand, within Rv0822c at 915.125 kb on + strand, within Rv0822c at 915.125 kb on + strand, within Rv0822c at 915.126 kb on - strand, within Rv0822c at 915.126 kb on - strand, within Rv0822c at 915.126 kb on - strand, within Rv0822c at 915.126 kb on - strand, within Rv0822c at 915.126 kb on - strand, within Rv0822c at 915.126 kb on - strand, within Rv0822c at 915.126 kb on - strand, within Rv0822c at 915.192 kb on - strand, within Rv0822c at 915.192 kb on - strand, within Rv0822c at 915.217 kb on + strand, within Rv0822c at 915.217 kb on + strand, within Rv0822c at 915.218 kb on - strand, within Rv0822c at 915.323 kb on - strand, within Rv0822c at 915.323 kb on - strand, within Rv0822c at 915.330 kb on + strand, within Rv0822c at 915.331 kb on - strand, within Rv0822c at 915.331 kb on - strand, within Rv0822c at 915.374 kb on + strand, within Rv0822c at 915.425 kb on + strand, within Rv0822c at 915.425 kb on + strand, within Rv0822c at 915.426 kb on - strand, within Rv0822c at 915.426 kb on - strand, within Rv0822c at 915.426 kb on - strand, within Rv0822c at 915.426 kb on - strand, within Rv0822c at 915.426 kb on - strand, within Rv0822c at 915.426 kb on - strand, within Rv0822c at 915.429 kb on + strand, within Rv0822c at 915.697 kb on + strand, within Rv0822c at 915.697 kb on + strand, within Rv0822c at 915.698 kb on - strand, within Rv0822c at 915.947 kb on + strand, within Rv0822c at 915.948 kb on - strand, within Rv0822c at 915.948 kb on - strand, within Rv0822c at 916.153 kb on - strand at 916.316 kb on + strand at 916.316 kb on + strand at 916.334 kb on + strand at 916.335 kb on - strand at 916.335 kb on - strand at 916.719 kb on - strand, within Rv0823c at 916.876 kb on + strand, within Rv0823c at 916.876 kb on + strand, within Rv0823c at 916.964 kb on + strand, within Rv0823c at 916.964 kb on + strand, within Rv0823c at 916.964 kb on + strand, within Rv0823c at 916.964 kb on + strand, within Rv0823c at 916.965 kb on - strand, within Rv0823c at 916.965 kb on - strand, within Rv0823c at 916.965 kb on - strand, within Rv0823c at 916.965 kb on - strand, within Rv0823c at 916.965 kb on - strand, within Rv0823c at 917.049 kb on - strand, within Rv0823c at 917.049 kb on - strand, within Rv0823c at 917.064 kb on + strand, within Rv0823c at 917.177 kb on - strand, within Rv0823c at 917.178 kb on + strand, within Rv0823c at 917.179 kb on - strand, within Rv0823c at 917.179 kb on - strand, within Rv0823c at 917.228 kb on - strand, within Rv0823c
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Rifampicin 0.00045 ug/mL remove 913,317 + Rv0820 0.76 -1.7 913,317 + Rv0820 0.76 -0.6 913,318 - Rv0820 0.76 -0.1 913,340 + Rv0820 0.79 -3.4 913,341 - Rv0820 0.79 -3.8 913,420 + Rv0820 0.89 -3.2 913,421 - Rv0820 0.89 -2.8 913,500 + +0.5 913,631 + Rv0821c 0.11 +0.9 913,632 - Rv0821c 0.12 -0.0 913,632 - Rv0821c 0.12 -1.5 913,842 - Rv0821c 0.44 +0.2 914,135 - -0.1 914,186 + -0.1 914,186 + -1.6 914,205 - +0.5 914,211 + -0.3 914,212 - -0.2 914,338 + +0.0 914,339 - -0.2 914,622 + Rv0822c 0.18 +0.9 914,622 + Rv0822c 0.18 -0.1 914,622 + Rv0822c 0.18 +0.9 914,623 - Rv0822c 0.18 -0.3 914,829 + Rv0822c 0.28 +0.1 914,860 + Rv0822c 0.29 -0.3 914,861 - Rv0822c 0.29 -0.2 914,861 - Rv0822c 0.29 -0.1 914,862 + Rv0822c 0.29 -0.4 914,904 + Rv0822c 0.31 +0.1 914,904 + Rv0822c 0.31 -0.1 914,960 + Rv0822c 0.34 +1.3 914,960 + Rv0822c 0.34 -0.5 914,961 - Rv0822c 0.34 -0.4 914,961 - Rv0822c 0.34 +1.9 914,961 - Rv0822c 0.34 -0.8 915,125 + Rv0822c 0.42 -0.5 915,125 + Rv0822c 0.42 -0.3 915,125 + Rv0822c 0.42 -2.0 915,125 + Rv0822c 0.42 +0.3 915,126 - Rv0822c 0.42 -1.0 915,126 - Rv0822c 0.42 -1.3 915,126 - Rv0822c 0.42 -0.7 915,126 - Rv0822c 0.42 -1.8 915,126 - Rv0822c 0.42 +1.9 915,126 - Rv0822c 0.42 -2.4 915,126 - Rv0822c 0.42 +0.2 915,192 - Rv0822c 0.45 -0.0 915,192 - Rv0822c 0.45 +0.3 915,217 + Rv0822c 0.47 -0.2 915,217 + Rv0822c 0.47 +0.3 915,218 - Rv0822c 0.47 +0.2 915,323 - Rv0822c 0.52 -1.1 915,323 - Rv0822c 0.52 +2.1 915,330 + Rv0822c 0.52 -0.4 915,331 - Rv0822c 0.52 +0.6 915,331 - Rv0822c 0.52 +0.6 915,374 + Rv0822c 0.54 -0.3 915,425 + Rv0822c 0.57 +0.9 915,425 + Rv0822c 0.57 -0.3 915,426 - Rv0822c 0.57 +0.8 915,426 - Rv0822c 0.57 -0.3 915,426 - Rv0822c 0.57 -0.2 915,426 - Rv0822c 0.57 +0.7 915,426 - Rv0822c 0.57 +0.9 915,426 - Rv0822c 0.57 -0.2 915,429 + Rv0822c 0.57 -0.2 915,697 + Rv0822c 0.70 -0.9 915,697 + Rv0822c 0.70 -0.1 915,698 - Rv0822c 0.70 -0.1 915,947 + Rv0822c 0.82 -0.4 915,948 - Rv0822c 0.82 -1.2 915,948 - Rv0822c 0.82 -0.8 916,153 - +0.1 916,316 + +0.6 916,316 + -0.4 916,334 + +0.3 916,335 - +0.1 916,335 - -0.4 916,719 - Rv0823c 0.21 +0.1 916,876 + Rv0823c 0.34 +0.0 916,876 + Rv0823c 0.34 -0.1 916,964 + Rv0823c 0.42 -0.2 916,964 + Rv0823c 0.42 -0.2 916,964 + Rv0823c 0.42 -0.1 916,964 + Rv0823c 0.42 -1.2 916,965 - Rv0823c 0.42 -0.1 916,965 - Rv0823c 0.42 -0.6 916,965 - Rv0823c 0.42 -0.1 916,965 - Rv0823c 0.42 +0.3 916,965 - Rv0823c 0.42 -1.5 917,049 - Rv0823c 0.49 +0.1 917,049 - Rv0823c 0.49 +0.0 917,064 + Rv0823c 0.50 -0.2 917,177 - Rv0823c 0.60 +0.5 917,178 + Rv0823c 0.60 -1.1 917,179 - Rv0823c 0.60 -0.1 917,179 - Rv0823c 0.60 -0.1 917,228 - Rv0823c 0.64 +1.0
Or see this region's nucleotide sequence