Experiment: 7H9 with Rifampicin 0.00045 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0368c and Rv0369c are separated by 5 nucleotides Rv0369c and Rv0370c are separated by 100 nucleotides Rv0370c and Rv0371c overlap by 4 nucleotides Rv0371c and Rv0372c overlap by 4 nucleotides
Rv0368c: Rv0368c - Conserved hypothetical protein, at 445,314 to 446,525
Rv0368c
Rv0369c: Rv0369c - Possible membrane oxidoreductase, at 446,531 to 447,046
Rv0369c
Rv0370c: Rv0370c - Possible oxidoreductase, at 447,147 to 448,043
Rv0370c
Rv0371c: Rv0371c - Conserved hypothetical protein, at 448,040 to 448,633
Rv0371c
Rv0372c: Rv0372c - Conserved hypothetical protein, at 448,630 to 449,385
Rv0372c
Position (kb) 447
448
449 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 446.147 kb on + strand, within Rv0368c at 446.147 kb on + strand, within Rv0368c at 446.148 kb on - strand, within Rv0368c at 446.148 kb on - strand, within Rv0368c at 446.283 kb on + strand, within Rv0368c at 446.284 kb on - strand, within Rv0368c at 446.284 kb on - strand, within Rv0368c at 446.332 kb on - strand, within Rv0368c at 446.366 kb on - strand, within Rv0368c at 447.006 kb on + strand at 447.074 kb on + strand at 447.601 kb on - strand, within Rv0370c at 447.735 kb on + strand, within Rv0370c at 447.784 kb on - strand, within Rv0370c
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Rifampicin 0.00045 ug/mL remove 446,147 + Rv0368c 0.69 +0.4 446,147 + Rv0368c 0.69 -2.6 446,148 - Rv0368c 0.69 +0.4 446,148 - Rv0368c 0.69 -0.1 446,283 + Rv0368c 0.80 +1.9 446,284 - Rv0368c 0.80 -0.2 446,284 - Rv0368c 0.80 -0.2 446,332 - Rv0368c 0.84 -0.3 446,366 - Rv0368c 0.87 -0.3 447,006 + -0.1 447,074 + +3.7 447,601 - Rv0370c 0.51 -0.1 447,735 + Rv0370c 0.66 +0.4 447,784 - Rv0370c 0.71 +0.6
Or see this region's nucleotide sequence