Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv3496c

Experiment: 7H9 with Rifampicin 0.00045 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Rifampicin 0.00045 ug/mL
3,913,577	+		Rv3495c	0.17	-1.3
3,913,577	+		Rv3495c	0.17	-1.6
3,913,578	-		Rv3495c	0.17	-0.9
3,913,578	-		Rv3495c	0.17	-1.2
3,913,578	-		Rv3495c	0.17	-0.6
3,913,583	-		Rv3495c	0.18	+0.7
3,913,583	-		Rv3495c	0.18	+0.2
3,913,696	+		Rv3495c	0.27	-1.5
3,914,051	+		Rv3495c	0.58	-2.0
3,914,188	-		Rv3495c	0.70	-0.2
3,914,193	+		Rv3495c	0.70	-1.3
3,914,193	+		Rv3495c	0.70	-0.7
3,914,193	+		Rv3495c	0.70	-1.8
3,914,194	-		Rv3495c	0.70	-0.4
3,914,194	-		Rv3495c	0.70	+0.1
3,914,612	+				+0.1
3,914,612	+				-1.2
3,914,613	-				-1.3
3,914,613	-				-0.8
3,914,613	-				-0.5
3,914,721	+		Rv3496c	0.14	-0.9
3,914,722	-		Rv3496c	0.14	-2.5
3,914,722	-		Rv3496c	0.14	+2.0
3,914,782	-		Rv3496c	0.19	-0.6
3,914,964	+		Rv3496c	0.32	-0.7
3,914,964	+		Rv3496c	0.32	-0.3
3,914,964	+		Rv3496c	0.32	-2.2
3,914,964	+		Rv3496c	0.32	-1.4
3,914,965	-		Rv3496c	0.32	-0.7
3,914,965	-		Rv3496c	0.32	-0.7
3,914,966	+		Rv3496c	0.32	-0.7
3,914,973	+		Rv3496c	0.33	-0.9
3,914,973	+		Rv3496c	0.33	-1.1
3,914,973	+		Rv3496c	0.33	-0.3
3,915,255	-		Rv3496c	0.53	-0.6
3,915,527	+		Rv3496c	0.73	-1.0
3,915,543	+		Rv3496c	0.75	+0.5
3,915,544	-		Rv3496c	0.75	-0.7
3,915,544	-		Rv3496c	0.75	-1.2
3,915,544	-		Rv3496c	0.75	-0.7
3,915,644	-		Rv3496c	0.82	-0.2
3,915,644	-		Rv3496c	0.82	-1.1
3,915,729	+		Rv3496c	0.88	-0.6
3,915,773	-				-0.9
3,915,775	+				-0.8
3,915,795	+				-2.3
3,915,795	+				-0.2
3,915,796	-				-0.3
3,915,796	-				-0.4
3,916,076	+		Rv3497c	0.18	-1.1
3,916,107	+		Rv3497c	0.21	+0.0
3,916,107	+		Rv3497c	0.21	-0.3
3,916,108	-		Rv3497c	0.21	+2.0
3,916,109	+		Rv3497c	0.21	-0.3
3,916,109	+		Rv3497c	0.21	-1.8
3,916,110	-		Rv3497c	0.21	-0.8
3,916,177	-		Rv3497c	0.27	-0.5
3,916,497	+		Rv3497c	0.57	-0.6
3,916,550	+		Rv3497c	0.62	-1.1
3,916,551	-		Rv3497c	0.62	-0.0
3,916,767	-		Rv3497c	0.82	-0.3
3,916,767	-		Rv3497c	0.82	-2.8
3,916,808	+		Rv3497c	0.86	-1.2
3,916,818	-		Rv3497c	0.87	-1.0