Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1620c

Experiment: 7H9 with Rifampicin 0.00045 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRv1619 and Rv1620c overlap by 67 nucleotidesRv1620c and Rv1621c overlap by 4 nucleotides Rv1619: Rv1619 - Conserved membrane protein, at 1,818,575 to 1,820,029 Rv1619 Rv1620c: Rv1620c - Probable 'component linked with the assembly of cytochrome' transport transmembrane ATP-binding protein ABC transporter CydC, at 1,819,963 to 1,821,693 Rv1620c Rv1621c: Rv1621c - Probable 'component linked with the assembly of cytochrome' transport transmembrane ATP-binding protein ABC transporter CydD, at 1,821,690 to 1,823,273 Rv1621c Position (kb) 1819 1820 1821 1822Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1819.690 kb on - strand, within Rv1619at 1819.944 kb on - strandat 1821.381 kb on + strand, within Rv1620cat 1822.206 kb on - strand, within Rv1621c

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Per-strain Table

Position Strand Gene LocusTag Fraction 7H9 with Rifampicin 0.00045 ug/mL
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1,819,690 - Rv1619 0.77 +2.9
1,819,944 - -0.4
1,821,381 + Rv1620c 0.82 -2.5
1,822,206 - Rv1621c 0.33 -2.2

Or see this region's nucleotide sequence