Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1508c

Experiment: 7H9 with Rifampicin 0.00045 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Rifampicin 0.00045 ug/mL
1,697,259	-		Rv1507c	0.76	-0.6
1,697,607	+		Rv1507A	0.50	-0.5
1,697,608	-		Rv1507A	0.50	-0.4
1,697,742	-		Rv1507A	0.77	-0.1
1,697,742	-		Rv1507A	0.77	-0.7
1,697,818	-				-0.5
1,697,850	-				+2.2
1,698,008	-				+0.7
1,698,008	-				-0.3
1,698,030	+				-0.2
1,698,096	+				-0.3
1,698,105	+				+0.3
1,698,106	-				-0.0
1,698,208	+				-0.2
1,698,267	-				-0.6
1,698,267	-				-0.7
1,698,267	-				-0.8
1,698,269	+				-0.9
1,698,270	-				+0.4
1,698,338	+		Rv1508c	0.14	+0.1
1,698,364	-		Rv1508c	0.15	-0.6
1,698,376	-		Rv1508c	0.16	-0.9
1,698,558	+		Rv1508c	0.26	-0.3
1,698,558	+		Rv1508c	0.26	-0.3
1,698,559	-		Rv1508c	0.26	-0.3
1,698,559	-		Rv1508c	0.26	-0.1
1,698,559	-		Rv1508c	0.26	-0.1
1,698,629	-		Rv1508c	0.30	+0.3
1,698,663	-		Rv1508c	0.32	-0.2
1,698,668	+		Rv1508c	0.32	-0.2
1,698,736	-		Rv1508c	0.36	+0.9
1,698,749	-		Rv1508c	0.36	-0.1
1,698,817	+		Rv1508c	0.40	+0.2
1,698,818	-		Rv1508c	0.40	+1.2
1,698,818	-		Rv1508c	0.40	-0.2
1,699,057	-		Rv1508c	0.53	-0.5
1,699,073	+		Rv1508c	0.54	+0.4
1,699,202	+		Rv1508c	0.61	-0.3
1,699,202	+		Rv1508c	0.61	-0.8
1,699,202	+		Rv1508c	0.61	-0.4
1,699,203	-		Rv1508c	0.62	+0.4
1,699,203	-		Rv1508c	0.62	-0.2
1,699,203	-		Rv1508c	0.62	+0.9
1,699,275	-		Rv1508c	0.66	+0.3
1,699,290	+		Rv1508c	0.66	+0.0
1,699,296	-		Rv1508c	0.67	-0.1
1,699,359	+		Rv1508c	0.70	+0.3
1,699,360	-		Rv1508c	0.70	-0.4
1,699,404	+		Rv1508c	0.73	+1.3
1,699,404	+		Rv1508c	0.73	+0.1
1,699,430	-		Rv1508c	0.74	-0.2
1,699,466	+		Rv1508c	0.76	+0.1
1,699,467	-		Rv1508c	0.76	-0.1
1,699,515	+		Rv1508c	0.79	-0.4
1,699,516	-		Rv1508c	0.79	+0.9
1,699,516	-		Rv1508c	0.79	+1.4
1,699,516	-		Rv1508c	0.79	-0.3
1,699,727	-				+0.1
1,699,737	+				-0.4
1,699,796	+				+0.3
1,699,796	+				+0.3
1,699,796	+				-0.3
1,699,796	+				+0.5
1,699,797	-				+0.2
1,699,826	+				-0.5
1,699,826	+				-0.1
1,699,826	+				-0.0
1,699,826	+				-0.4
1,699,826	+				-0.4
1,699,826	+				-0.1
1,699,827	-				-1.3
1,699,911	+		Rv1508A	0.12	-0.2
1,699,919	+		Rv1508A	0.15	-0.2
1,699,938	+		Rv1508A	0.20	+0.1
1,699,938	+		Rv1508A	0.20	-1.8
1,699,938	+		Rv1508A	0.20	+0.8
1,699,939	-		Rv1508A	0.20	-0.4
1,699,939	-		Rv1508A	0.20	-0.3
1,699,939	-		Rv1508A	0.20	+0.3
1,699,953	-		Rv1508A	0.24	-1.1
1,700,004	+		Rv1508A	0.38	+0.8
1,700,078	+		Rv1508A	0.58	-1.9
1,700,153	+		Rv1508A	0.79	-0.1
1,700,157	+		Rv1508A	0.80	+0.5
1,700,230	-				+0.1
1,700,326	-		Rv1509	0.13	-1.1
1,700,326	-		Rv1509	0.13	-0.3
1,700,423	+		Rv1509	0.24	+2.4
1,700,424	-		Rv1509	0.24	-0.1
1,700,581	-		Rv1509	0.42	-0.1
1,700,805	+		Rv1509	0.67	+0.5
1,700,806	-		Rv1509	0.67	-0.1