Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1030

Experiment: 7H9 with Rifampicin 0.00045 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Rifampicin 0.00045 ug/mL
1,153,107	+		Rv1029	0.64	+0.2
1,153,107	+		Rv1029	0.64	+1.7
1,153,108	-		Rv1029	0.64	+0.6
1,153,196	-		Rv1029	0.69	-0.7
1,153,257	+		Rv1029	0.73	+0.6
1,153,305	+		Rv1029	0.75	+0.5
1,153,305	+		Rv1029	0.75	-0.5
1,153,305	+		Rv1029	0.75	+0.1
1,153,306	-		Rv1029	0.75	+0.4
1,153,419	+		Rv1029	0.82	+0.4
1,153,426	-		Rv1029	0.82	-0.1
1,153,488	+		Rv1029	0.86	+0.8
1,153,524	-		Rv1029	0.88	-0.2
1,153,651	+				-0.3
1,153,714	+				+2.0
1,154,508	-		Rv1030	0.37	-0.4
1,154,508	-		Rv1030	0.37	+0.1
1,155,082	-		Rv1030	0.64	+0.6
1,155,412	+		Rv1030	0.79	+0.5
1,155,413	-		Rv1030	0.79	+1.2
1,155,563	+		Rv1030	0.86	-0.2
1,155,564	-		Rv1030	0.86	+1.4
1,155,773	+				-0.6
1,155,773	+				+0.2
1,155,774	-				-0.3
1,155,774	-				-0.6
1,155,802	+				+0.4
1,156,045	+		Rv1031	0.34	+0.4
1,156,046	-		Rv1031	0.34	-0.2
1,156,082	-		Rv1031	0.40	-0.3
1,156,302	+		Rv1031	0.79	-0.3
1,156,303	-		Rv1031	0.79	-0.0
1,156,303	-		Rv1031	0.79	+0.9
1,156,737	+		Rv1032c	0.20	+1.0
1,156,738	-		Rv1032c	0.20	-0.3
1,156,759	+		Rv1032c	0.22	+0.7
1,156,759	+		Rv1032c	0.22	-0.3