Experiment: 7H9 with Rifampicin 0.00045 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0071 and Rv0072 are separated by 430 nucleotides Rv0072 and Rv0073 are separated by 2 nucleotides
Rv0071: Rv0071 - Possible maturase, at 79,486 to 80,193
Rv0071
Rv0072: Rv0072 - Probable glutamine-transport transmembrane protein ABC transporter, at 80,624 to 81,673
Rv0072
Rv0073: Rv0073 - Probable glutamine-transport ATP-binding protein ABC transporter, at 81,676 to 82,668
Rv0073
Position (kb) 80
81
82 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 79.788 kb on - strand, within Rv0071 at 79.894 kb on + strand, within Rv0071 at 79.894 kb on + strand, within Rv0071 at 79.895 kb on - strand, within Rv0071 at 79.917 kb on + strand, within Rv0071 at 80.521 kb on + strand at 80.522 kb on - strand at 80.522 kb on - strand at 80.522 kb on - strand at 80.552 kb on - strand at 80.612 kb on + strand at 80.613 kb on - strand at 81.166 kb on - strand, within Rv0072 at 81.179 kb on + strand, within Rv0072 at 81.180 kb on - strand, within Rv0072 at 81.216 kb on + strand, within Rv0072 at 81.216 kb on + strand, within Rv0072 at 81.216 kb on + strand, within Rv0072 at 81.216 kb on + strand, within Rv0072 at 81.216 kb on + strand, within Rv0072 at 81.216 kb on + strand, within Rv0072 at 81.216 kb on + strand, within Rv0072 at 81.216 kb on + strand, within Rv0072 at 81.217 kb on - strand, within Rv0072 at 81.217 kb on - strand, within Rv0072 at 81.217 kb on - strand, within Rv0072 at 81.217 kb on - strand, within Rv0072 at 81.220 kb on + strand, within Rv0072 at 81.221 kb on - strand, within Rv0072 at 81.221 kb on - strand, within Rv0072 at 81.374 kb on + strand, within Rv0072 at 81.374 kb on + strand, within Rv0072 at 81.374 kb on + strand, within Rv0072 at 81.396 kb on + strand, within Rv0072 at 81.396 kb on + strand, within Rv0072 at 81.396 kb on + strand, within Rv0072 at 81.396 kb on + strand, within Rv0072 at 81.445 kb on + strand, within Rv0072 at 81.462 kb on + strand, within Rv0072 at 81.567 kb on - strand, within Rv0072 at 81.567 kb on - strand, within Rv0072 at 81.567 kb on - strand, within Rv0072 at 81.715 kb on + strand at 81.716 kb on - strand at 81.716 kb on - strand at 81.716 kb on - strand at 81.716 kb on - strand at 81.727 kb on + strand at 81.735 kb on + strand at 81.896 kb on + strand, within Rv0073 at 81.896 kb on + strand, within Rv0073 at 81.897 kb on - strand, within Rv0073 at 81.897 kb on - strand, within Rv0073 at 81.927 kb on + strand, within Rv0073 at 81.927 kb on + strand, within Rv0073 at 81.928 kb on - strand, within Rv0073 at 81.928 kb on - strand, within Rv0073 at 82.004 kb on + strand, within Rv0073 at 82.005 kb on - strand, within Rv0073 at 82.362 kb on - strand, within Rv0073 at 82.417 kb on + strand, within Rv0073 at 82.505 kb on - strand, within Rv0073 at 82.585 kb on + strand at 82.586 kb on - strand at 82.587 kb on + strand at 82.588 kb on - strand at 82.588 kb on - strand at 82.666 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Rifampicin 0.00045 ug/mL remove 79,788 - Rv0071 0.43 -0.3 79,894 + Rv0071 0.58 -0.4 79,894 + Rv0071 0.58 +0.8 79,895 - Rv0071 0.58 -0.2 79,917 + Rv0071 0.61 -0.6 80,521 + +0.4 80,522 - +0.4 80,522 - +0.1 80,522 - -0.3 80,552 - +1.1 80,612 + -0.4 80,613 - -0.3 81,166 - Rv0072 0.52 -0.6 81,179 + Rv0072 0.53 -0.1 81,180 - Rv0072 0.53 -0.3 81,216 + Rv0072 0.56 +1.0 81,216 + Rv0072 0.56 -0.4 81,216 + Rv0072 0.56 -0.1 81,216 + Rv0072 0.56 +1.0 81,216 + Rv0072 0.56 -0.8 81,216 + Rv0072 0.56 -0.7 81,216 + Rv0072 0.56 +0.3 81,216 + Rv0072 0.56 +1.0 81,217 - Rv0072 0.56 -0.9 81,217 - Rv0072 0.56 +2.0 81,217 - Rv0072 0.56 -0.5 81,217 - Rv0072 0.56 -0.7 81,220 + Rv0072 0.57 +0.4 81,221 - Rv0072 0.57 -0.4 81,221 - Rv0072 0.57 -0.5 81,374 + Rv0072 0.71 -0.2 81,374 + Rv0072 0.71 -0.1 81,374 + Rv0072 0.71 -0.3 81,396 + Rv0072 0.74 +2.0 81,396 + Rv0072 0.74 -1.2 81,396 + Rv0072 0.74 -1.9 81,396 + Rv0072 0.74 -0.7 81,445 + Rv0072 0.78 -0.8 81,462 + Rv0072 0.80 -0.8 81,567 - Rv0072 0.90 -0.6 81,567 - Rv0072 0.90 -0.5 81,567 - Rv0072 0.90 -3.2 81,715 + +0.4 81,716 - -0.3 81,716 - +0.8 81,716 - -1.4 81,716 - -0.3 81,727 + +0.7 81,735 + -0.3 81,896 + Rv0073 0.22 -0.3 81,896 + Rv0073 0.22 -0.3 81,897 - Rv0073 0.22 -0.2 81,897 - Rv0073 0.22 -0.8 81,927 + Rv0073 0.25 +0.5 81,927 + Rv0073 0.25 +2.0 81,928 - Rv0073 0.25 +0.2 81,928 - Rv0073 0.25 -0.3 82,004 + Rv0073 0.33 -0.3 82,005 - Rv0073 0.33 -0.0 82,362 - Rv0073 0.69 -0.1 82,417 + Rv0073 0.75 -0.7 82,505 - Rv0073 0.83 +0.6 82,585 + -0.6 82,586 - -0.5 82,587 + +0.5 82,588 - -0.6 82,588 - +2.0 82,666 + -0.6
Or see this region's nucleotide sequence