Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2694

Experiment: MoLS4 with (C) D,L-Lactate (20mM)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2691 and DVU2692 are separated by 9 nucleotidesDVU2692 and DVU2693 are separated by 85 nucleotidesDVU2693 and DVU2694 are separated by 81 nucleotidesDVU2694 and DVU2695 are separated by 8 nucleotidesDVU2695 and DVU2696 overlap by 4 nucleotidesDVU2696 and DVU2697 are separated by 12 nucleotides DVU2691: DVU2691 - hypothetical protein (TIGR), at 2,805,178 to 2,805,711 DVU2691 DVU2692: DVU2692 - conserved domain protein (TIGR), at 2,805,721 to 2,805,957 DVU2692 DVU2693: DVU2693 - hypothetical protein (TIGR), at 2,806,043 to 2,806,282 DVU2693 DVU2694: DVU2694 - hypothetical protein (TIGR), at 2,806,364 to 2,806,798 DVU2694 DVU2695: DVU2695 - conserved hypothetical protein (TIGR), at 2,806,807 to 2,807,223 DVU2695 DVU2696: DVU2696 - conserved hypothetical protein (TIGR), at 2,807,220 to 2,807,708 DVU2696 DVU2697: DVU2697 - hypothetical protein (TIGR), at 2,807,721 to 2,808,059 DVU2697 Position (kb) 2806 2807Strain fitness (log2 ratio) -2 -1 0 1 2at 2805.478 kb on + strand, within DVU2691at 2805.486 kb on - strand, within DVU2691at 2805.533 kb on - strand, within DVU2691at 2805.552 kb on - strand, within DVU2691at 2805.552 kb on - strand, within DVU2691at 2805.636 kb on + strand, within DVU2691at 2805.645 kb on - strand, within DVU2691at 2805.687 kb on - strandat 2805.687 kb on - strandat 2805.687 kb on - strandat 2805.743 kb on - strandat 2805.865 kb on + strand, within DVU2692at 2805.946 kb on - strandat 2806.015 kb on + strandat 2806.155 kb on + strand, within DVU2693at 2806.155 kb on + strand, within DVU2693at 2806.155 kb on + strand, within DVU2693at 2806.155 kb on + strand, within DVU2693at 2806.155 kb on + strand, within DVU2693at 2806.155 kb on + strand, within DVU2693at 2806.163 kb on - strand, within DVU2693at 2806.163 kb on - strand, within DVU2693at 2806.163 kb on - strand, within DVU2693at 2806.163 kb on - strand, within DVU2693at 2806.277 kb on - strandat 2806.364 kb on - strandat 2806.365 kb on + strandat 2806.373 kb on - strandat 2806.486 kb on - strand, within DVU2694at 2806.542 kb on - strand, within DVU2694at 2806.574 kb on + strand, within DVU2694at 2806.608 kb on + strand, within DVU2694at 2806.608 kb on + strand, within DVU2694at 2806.616 kb on - strand, within DVU2694at 2806.670 kb on + strand, within DVU2694at 2806.736 kb on - strand, within DVU2694at 2806.742 kb on - strand, within DVU2694at 2806.747 kb on - strand, within DVU2694at 2806.755 kb on - strandat 2806.759 kb on + strandat 2806.782 kb on + strandat 2806.790 kb on - strandat 2806.987 kb on - strand, within DVU2695at 2806.990 kb on + strand, within DVU2695at 2807.050 kb on - strand, within DVU2695at 2807.121 kb on + strand, within DVU2695at 2807.121 kb on + strand, within DVU2695at 2807.121 kb on + strand, within DVU2695at 2807.138 kb on + strand, within DVU2695at 2807.138 kb on + strand, within DVU2695at 2807.187 kb on + strandat 2807.187 kb on + strandat 2807.220 kb on - strandat 2807.229 kb on + strandat 2807.237 kb on - strandat 2807.278 kb on - strand, within DVU2696at 2807.323 kb on - strand, within DVU2696at 2807.332 kb on - strand, within DVU2696at 2807.332 kb on - strand, within DVU2696at 2807.332 kb on - strand, within DVU2696at 2807.332 kb on - strand, within DVU2696at 2807.332 kb on - strand, within DVU2696at 2807.332 kb on - strand, within DVU2696at 2807.332 kb on - strand, within DVU2696at 2807.332 kb on - strand, within DVU2696at 2807.410 kb on + strand, within DVU2696at 2807.418 kb on - strand, within DVU2696at 2807.437 kb on - strand, within DVU2696at 2807.461 kb on - strand, within DVU2696at 2807.598 kb on + strand, within DVU2696at 2807.602 kb on + strand, within DVU2696at 2807.672 kb on + strandat 2807.697 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with (C) D,L-Lactate (20mM)
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2,805,478 + DVU2691 0.56 -0.2
2,805,486 - DVU2691 0.58 -0.5
2,805,533 - DVU2691 0.66 -0.7
2,805,552 - DVU2691 0.70 -0.1
2,805,552 - DVU2691 0.70 -0.1
2,805,636 + DVU2691 0.86 -0.4
2,805,645 - DVU2691 0.87 -0.2
2,805,687 - +0.7
2,805,687 - -1.1
2,805,687 - -0.9
2,805,743 - -0.3
2,805,865 + DVU2692 0.61 -0.8
2,805,946 - -1.0
2,806,015 + -0.5
2,806,155 + DVU2693 0.47 -0.1
2,806,155 + DVU2693 0.47 -0.6
2,806,155 + DVU2693 0.47 -0.1
2,806,155 + DVU2693 0.47 -0.4
2,806,155 + DVU2693 0.47 -0.7
2,806,155 + DVU2693 0.47 +0.7
2,806,163 - DVU2693 0.50 +0.2
2,806,163 - DVU2693 0.50 +0.4
2,806,163 - DVU2693 0.50 +0.3
2,806,163 - DVU2693 0.50 -1.1
2,806,277 - -2.3
2,806,364 - +0.0
2,806,365 + -0.4
2,806,373 - -0.8
2,806,486 - DVU2694 0.28 -0.6
2,806,542 - DVU2694 0.41 -0.3
2,806,574 + DVU2694 0.48 -1.3
2,806,608 + DVU2694 0.56 -0.5
2,806,608 + DVU2694 0.56 -0.3
2,806,616 - DVU2694 0.58 -1.3
2,806,670 + DVU2694 0.70 -1.0
2,806,736 - DVU2694 0.86 -0.1
2,806,742 - DVU2694 0.87 -0.4
2,806,747 - DVU2694 0.88 -0.9
2,806,755 - -0.2
2,806,759 + +0.0
2,806,782 + +0.8
2,806,790 - -0.9
2,806,987 - DVU2695 0.43 +0.9
2,806,990 + DVU2695 0.44 -0.2
2,807,050 - DVU2695 0.58 -0.5
2,807,121 + DVU2695 0.75 -0.5
2,807,121 + DVU2695 0.75 -0.2
2,807,121 + DVU2695 0.75 +1.6
2,807,138 + DVU2695 0.79 -2.3
2,807,138 + DVU2695 0.79 -1.0
2,807,187 + -0.9
2,807,187 + -0.9
2,807,220 - +0.2
2,807,229 + +0.3
2,807,237 - -0.6
2,807,278 - DVU2696 0.12 +0.1
2,807,323 - DVU2696 0.21 +1.9
2,807,332 - DVU2696 0.23 -0.3
2,807,332 - DVU2696 0.23 -1.5
2,807,332 - DVU2696 0.23 +0.0
2,807,332 - DVU2696 0.23 +0.7
2,807,332 - DVU2696 0.23 -0.9
2,807,332 - DVU2696 0.23 +0.0
2,807,332 - DVU2696 0.23 -0.0
2,807,332 - DVU2696 0.23 -0.2
2,807,410 + DVU2696 0.39 -0.4
2,807,418 - DVU2696 0.40 -0.1
2,807,437 - DVU2696 0.44 +0.0
2,807,461 - DVU2696 0.49 -0.6
2,807,598 + DVU2696 0.77 -0.3
2,807,602 + DVU2696 0.78 +0.7
2,807,672 + -0.7
2,807,697 - -0.9

Or see this region's nucleotide sequence