Experiment: no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0431 and Rv0432 are separated by 32 nucleotides Rv0432 and Rv0433 are separated by 1 nucleotides Rv0433 and Rv0434 are separated by 59 nucleotides Rv0434 and Rv0435c are separated by 179 nucleotides
Rv0431: Rv0431 - Putative tuberculin related peptide, at 519,073 to 519,567
Rv0431
Rv0432: Rv0432 - Periplasmic superoxide dismutase [Cu-Zn] SodC, at 519,600 to 520,322
Rv0432
Rv0433: Rv0433 - Conserved hypothetical protein, at 520,324 to 521,454
Rv0433
Rv0434: Rv0434 - Conserved hypothetical protein, at 521,514 to 522,167
Rv0434
Rv0435c: Rv0435c - Putative conserved ATPase, at 522,347 to 524,533
Rv0435c
Position (kb) 520
521
522 Strain fitness (log2 ratio) -2
-1
0
1
2 at 519.720 kb on - strand, within Rv0432 at 519.822 kb on - strand, within Rv0432 at 519.851 kb on - strand, within Rv0432 at 519.918 kb on - strand, within Rv0432 at 519.918 kb on - strand, within Rv0432 at 519.943 kb on + strand, within Rv0432 at 519.944 kb on - strand, within Rv0432 at 519.963 kb on - strand, within Rv0432 at 519.963 kb on - strand, within Rv0432 at 519.963 kb on - strand, within Rv0432 at 520.032 kb on + strand, within Rv0432 at 520.090 kb on + strand, within Rv0432 at 520.224 kb on + strand, within Rv0432 at 520.320 kb on + strand at 520.536 kb on + strand, within Rv0433 at 520.737 kb on - strand, within Rv0433 at 520.801 kb on + strand, within Rv0433 at 520.802 kb on - strand, within Rv0433 at 520.804 kb on + strand, within Rv0433 at 520.805 kb on - strand, within Rv0433 at 520.805 kb on - strand, within Rv0433 at 520.864 kb on + strand, within Rv0433 at 520.957 kb on + strand, within Rv0433 at 520.957 kb on + strand, within Rv0433 at 520.989 kb on + strand, within Rv0433 at 521.012 kb on + strand, within Rv0433 at 521.012 kb on + strand, within Rv0433 at 521.013 kb on - strand, within Rv0433 at 521.013 kb on - strand, within Rv0433 at 521.508 kb on + strand at 521.508 kb on + strand at 521.509 kb on - strand at 521.509 kb on - strand at 521.509 kb on - strand at 521.665 kb on + strand, within Rv0434 at 521.665 kb on + strand, within Rv0434 at 521.666 kb on - strand, within Rv0434 at 521.666 kb on - strand, within Rv0434 at 521.666 kb on - strand, within Rv0434 at 521.767 kb on - strand, within Rv0434 at 521.767 kb on - strand, within Rv0434 at 521.768 kb on + strand, within Rv0434 at 521.768 kb on + strand, within Rv0434 at 521.768 kb on + strand, within Rv0434 at 521.769 kb on - strand, within Rv0434 at 521.846 kb on - strand, within Rv0434 at 522.165 kb on + strand at 522.166 kb on - strand at 522.229 kb on + strand at 522.230 kb on - strand at 522.230 kb on - strand at 522.231 kb on + strand at 522.231 kb on + strand at 522.231 kb on + strand at 522.231 kb on + strand at 522.231 kb on + strand at 522.232 kb on - strand at 522.232 kb on - strand at 522.379 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction no stress control remove 519,720 - Rv0432 0.17 -0.3 519,822 - Rv0432 0.31 +0.0 519,851 - Rv0432 0.35 +0.8 519,918 - Rv0432 0.44 -0.1 519,918 - Rv0432 0.44 +0.7 519,943 + Rv0432 0.47 -0.8 519,944 - Rv0432 0.48 -0.6 519,963 - Rv0432 0.50 -0.3 519,963 - Rv0432 0.50 -0.3 519,963 - Rv0432 0.50 -0.7 520,032 + Rv0432 0.60 -0.3 520,090 + Rv0432 0.68 +0.2 520,224 + Rv0432 0.86 -0.4 520,320 + -0.9 520,536 + Rv0433 0.19 -0.1 520,737 - Rv0433 0.37 +1.2 520,801 + Rv0433 0.42 -0.3 520,802 - Rv0433 0.42 -0.8 520,804 + Rv0433 0.42 -0.5 520,805 - Rv0433 0.43 +1.7 520,805 - Rv0433 0.43 -0.4 520,864 + Rv0433 0.48 -1.6 520,957 + Rv0433 0.56 +0.2 520,957 + Rv0433 0.56 -0.2 520,989 + Rv0433 0.59 -1.1 521,012 + Rv0433 0.61 -0.4 521,012 + Rv0433 0.61 -1.0 521,013 - Rv0433 0.61 -0.3 521,013 - Rv0433 0.61 -0.6 521,508 + -1.0 521,508 + +1.7 521,509 - -0.9 521,509 - -0.2 521,509 - -0.3 521,665 + Rv0434 0.23 -0.4 521,665 + Rv0434 0.23 -0.3 521,666 - Rv0434 0.23 -0.3 521,666 - Rv0434 0.23 -0.1 521,666 - Rv0434 0.23 +0.1 521,767 - Rv0434 0.39 -0.8 521,767 - Rv0434 0.39 +0.3 521,768 + Rv0434 0.39 -0.7 521,768 + Rv0434 0.39 -0.4 521,768 + Rv0434 0.39 -1.8 521,769 - Rv0434 0.39 -0.4 521,846 - Rv0434 0.51 +0.4 522,165 + -1.2 522,166 - +0.9 522,229 + -0.8 522,230 - +0.4 522,230 - -0.3 522,231 + -0.5 522,231 + -1.3 522,231 + -1.1 522,231 + -1.3 522,231 + +0.6 522,232 - +2.2 522,232 - -0.4 522,379 + -0.2
Or see this region's nucleotide sequence