Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv3708c

Experiment: no stress control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRv3707c and Rv3708c are separated by 139 nucleotidesRv3708c and Rv3709c are separated by 0 nucleotides Rv3707c: Rv3707c - Conserved hypothetical protein, at 4,150,030 to 4,151,040 Rv3707c Rv3708c: Rv3708c - Aspartate-semialdehyde dehydrogenase Asd (ASA dehydrogenase) (ASADH) (aspartic semialdehyde dehydrogenase) (L-aspartate-beta-semialdehyde dehydrogenase), at 4,151,180 to 4,152,217 Rv3708c Rv3709c: Rv3709c - Aspartokinase Ask (aspartate kinase) [contains: aspartokinase alpha subunit (Ask-alpha); and aspartokinase beta subunit (Ask-beta)], at 4,152,218 to 4,153,483 Rv3709c Position (kb) 4151 4152 4153Strain fitness (log2 ratio) -1 0 1at 4150.197 kb on - strand, within Rv3707cat 4150.328 kb on + strand, within Rv3707cat 4150.530 kb on - strand, within Rv3707cat 4150.530 kb on - strand, within Rv3707cat 4150.571 kb on + strand, within Rv3707cat 4150.571 kb on + strand, within Rv3707cat 4150.571 kb on + strand, within Rv3707cat 4150.572 kb on - strand, within Rv3707cat 4150.572 kb on - strand, within Rv3707cat 4150.572 kb on - strand, within Rv3707cat 4150.574 kb on + strand, within Rv3707cat 4150.721 kb on + strand, within Rv3707cat 4150.883 kb on + strand, within Rv3707cat 4150.991 kb on + strandat 4152.238 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
remove
4,150,197 - Rv3707c 0.17 +0.3
4,150,328 + Rv3707c 0.29 -0.7
4,150,530 - Rv3707c 0.49 -0.3
4,150,530 - Rv3707c 0.49 -0.0
4,150,571 + Rv3707c 0.54 +0.0
4,150,571 + Rv3707c 0.54 -0.3
4,150,571 + Rv3707c 0.54 -0.8
4,150,572 - Rv3707c 0.54 -0.8
4,150,572 - Rv3707c 0.54 -0.8
4,150,572 - Rv3707c 0.54 -1.7
4,150,574 + Rv3707c 0.54 +0.2
4,150,721 + Rv3707c 0.68 -0.6
4,150,883 + Rv3707c 0.84 -0.1
4,150,991 + -0.2
4,152,238 - +0.9

Or see this region's nucleotide sequence