Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv3460c

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRv3458c and Rv3459c are separated by 8 nucleotidesRv3459c and Rv3460c are separated by 3 nucleotidesRv3460c and Rv3461c are separated by 215 nucleotidesRv3461c and Rv3462c are separated by 32 nucleotidesRv3462c and Rv3463 are separated by 253 nucleotides Rv3458c: Rv3458c - 30S ribosomal protein S4 RpsD, at 3,878,659 to 3,879,264 Rv3458c Rv3459c: Rv3459c - 30S ribosomal protein S11 RpsK, at 3,879,273 to 3,879,692 Rv3459c Rv3460c: Rv3460c - 30S ribosomal protein S13 RpsM, at 3,879,696 to 3,880,070 Rv3460c Rv3461c: Rv3461c - 50S ribosomal protein L36 RpmJ, at 3,880,286 to 3,880,399 Rv3461c Rv3462c: Rv3462c - Probable translation initiation factor if-1 InfA, at 3,880,432 to 3,880,653 Rv3462c Rv3463: Rv3463 - Conserved protein, at 3,880,907 to 3,881,764 Rv3463 Position (kb) 3879 3880 3881Strain fitness (log2 ratio) -1 0 1at 3880.720 kb on - strandat 3880.946 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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3,880,720 - +0.2
3,880,946 - -0.7

Or see this region's nucleotide sequence