Experiment: no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv3277 and Rv3278c overlap by 46 nucleotides Rv3278c and Rv3279c are separated by 42 nucleotides Rv3279c and Rv3280 are separated by 49 nucleotides
Rv3277: Rv3277 - Probable conserved transmembrane protein, at 3,659,878 to 3,660,696
Rv3277
Rv3278c: Rv3278c - Probable conserved transmembrane protein, at 3,660,651 to 3,661,169
Rv3278c
Rv3279c: Rv3279c - Possible bifunctional protein BirA: biotin operon repressor + biotin--[acetyl-CoA-carboxylase] synthetase (biotin--protein ligase), at 3,661,212 to 3,662,012
Rv3279c
Rv3280: Rv3280 - Probable propionyl-CoA carboxylase beta chain 5 AccD5 (pccase) (propanoyl-CoA:carbon dioxide ligase), at 3,662,062 to 3,663,708
Rv3280
Position (kb)
3661
3662
3663 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3660.630 kb on + strand at 3660.698 kb on - strand at 3660.736 kb on + strand, within Rv3278c at 3660.736 kb on + strand, within Rv3278c at 3660.737 kb on - strand, within Rv3278c at 3660.770 kb on + strand, within Rv3278c at 3661.004 kb on + strand, within Rv3278c at 3661.004 kb on + strand, within Rv3278c at 3661.004 kb on + strand, within Rv3278c at 3661.005 kb on - strand, within Rv3278c at 3661.162 kb on + strand at 3661.181 kb on + strand at 3661.213 kb on + strand at 3662.049 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction no stress control remove 3,660,630 + +1.3 3,660,698 - -1.1 3,660,736 + Rv3278c 0.16 +1.8 3,660,736 + Rv3278c 0.16 -2.2 3,660,737 - Rv3278c 0.17 -0.6 3,660,770 + Rv3278c 0.23 -0.3 3,661,004 + Rv3278c 0.68 -0.1 3,661,004 + Rv3278c 0.68 -0.0 3,661,004 + Rv3278c 0.68 -1.0 3,661,005 - Rv3278c 0.68 +0.1 3,661,162 + -0.3 3,661,181 + +0.1 3,661,213 + +0.6 3,662,049 - +1.1
Or see this region's nucleotide sequence