Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv3186

Experiment: no stress control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRv3185 and Rv3186 are separated by 221 nucleotidesRv3186 and Rv3187 overlap by 52 nucleotides Rv3185: Rv3185 - Probable transposase, at 3,551,556 to 3,552,542 Rv3185 Rv3186: Rv3186 - Probable transposase for insertion sequence element IS6110 (fragment), at 3,552,764 to 3,553,090 Rv3186 Rv3187: Rv3187 - Probable transposase, at 3,553,039 to 3,554,025 Rv3187 Position (kb) 3552 3553 3554Strain fitness (log2 ratio) -1 0 1at 3552.606 kb on - strandat 3552.649 kb on + strandat 3554.070 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
remove
3,552,606 - +0.4
3,552,649 + +0.1
3,554,070 + -1.1

Or see this region's nucleotide sequence