Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv3043c

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRv3042c and Rv3043c are separated by 37 nucleotidesRv3043c and Rv3044 are separated by 214 nucleotides Rv3042c: Rv3042c - Probable phosphoserine phosphatase SerB2 (PSP) (O-phosphoserine phosphohydrolase) (pspase), at 3,401,933 to 3,403,162 Rv3042c Rv3043c: Rv3043c - Probable cytochrome C oxidase polypeptide I CtaD (cytochrome AA3 subunit 1), at 3,403,200 to 3,404,921 Rv3043c Rv3044: Rv3044 - Probable FEIII-dicitrate-binding periplasmic lipoprotein FecB, at 3,405,136 to 3,406,215 Rv3044 Position (kb) 3403 3404 3405Strain fitness (log2 ratio) -2 -1 0 1 2at 3403.275 kb on - strandat 3404.981 kb on - strandat 3405.015 kb on - strandat 3405.108 kb on + strandat 3405.109 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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3,403,275 - -1.0
3,404,981 - -2.0
3,405,015 - -0.1
3,405,108 + +1.8
3,405,109 - -0.1

Or see this region's nucleotide sequence