Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv3042c

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRv3040c and Rv3041c overlap by 4 nucleotidesRv3041c and Rv3042c are separated by 14 nucleotidesRv3042c and Rv3043c are separated by 37 nucleotides Rv3040c: Rv3040c - Conserved protein, at 3,400,192 to 3,401,058 Rv3040c Rv3041c: Rv3041c - Probable conserved ATP-binding protein ABC transporter, at 3,401,055 to 3,401,918 Rv3041c Rv3042c: Rv3042c - Probable phosphoserine phosphatase SerB2 (PSP) (O-phosphoserine phosphohydrolase) (pspase), at 3,401,933 to 3,403,162 Rv3042c Rv3043c: Rv3043c - Probable cytochrome C oxidase polypeptide I CtaD (cytochrome AA3 subunit 1), at 3,403,200 to 3,404,921 Rv3043c Position (kb) 3401 3402 3403 3404Strain fitness (log2 ratio) -1 0 1at 3401.105 kb on - strandat 3401.341 kb on - strand, within Rv3041cat 3401.447 kb on - strand, within Rv3041cat 3401.507 kb on - strand, within Rv3041cat 3401.934 kb on + strandat 3401.935 kb on - strandat 3403.275 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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3,401,105 - -1.0
3,401,341 - Rv3041c 0.33 +0.0
3,401,447 - Rv3041c 0.45 -0.8
3,401,507 - Rv3041c 0.52 -0.6
3,401,934 + +1.2
3,401,935 - -0.6
3,403,275 - -1.0

Or see this region's nucleotide sequence