Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv2908c

Experiment: no stress control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRv2906c and Rv2907c are separated by 3 nucleotidesRv2907c and Rv2908c are separated by 13 nucleotidesRv2908c and Rv2909c are separated by 7 nucleotidesRv2909c and Rv2910c are separated by 183 nucleotides Rv2906c: Rv2906c - Probable tRNA (guanine-N1)-methyltransferase TrmD (M1G-methyltransferase) (tRNA [GM37] methyltransferase), at 3,215,665 to 3,216,357 Rv2906c Rv2907c: Rv2907c - Probable 16S rRNA processing protein RimM, at 3,216,361 to 3,216,891 Rv2907c Rv2908c: Rv2908c - Conserved hypothetical protein, at 3,216,905 to 3,217,147 Rv2908c Rv2909c: Rv2909c - 30S ribosomal protein S16 RpsP, at 3,217,155 to 3,217,643 Rv2909c Rv2910c: Rv2910c - Conserved hypothetical protein, at 3,217,827 to 3,218,270 Rv2910c Position (kb) 3216 3217 3218Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3217.658 kb on - strandat 3217.910 kb on - strand, within Rv2910cat 3218.036 kb on - strand, within Rv2910cat 3218.036 kb on - strand, within Rv2910cat 3218.037 kb on + strand, within Rv2910cat 3218.037 kb on + strand, within Rv2910cat 3218.038 kb on - strand, within Rv2910cat 3218.086 kb on + strand, within Rv2910cat 3218.116 kb on + strand, within Rv2910cat 3218.125 kb on + strand, within Rv2910cat 3218.126 kb on - strand, within Rv2910cat 3218.126 kb on - strand, within Rv2910c

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
remove
3,217,658 - -0.2
3,217,910 - Rv2910c 0.19 -0.2
3,218,036 - Rv2910c 0.47 -0.9
3,218,036 - Rv2910c 0.47 +0.5
3,218,037 + Rv2910c 0.47 -0.8
3,218,037 + Rv2910c 0.47 -0.3
3,218,038 - Rv2910c 0.48 -0.4
3,218,086 + Rv2910c 0.58 +2.9
3,218,116 + Rv2910c 0.65 -2.7
3,218,125 + Rv2910c 0.67 +0.9
3,218,126 - Rv2910c 0.67 +1.2
3,218,126 - Rv2910c 0.67 -0.6

Or see this region's nucleotide sequence