Experiment: no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv2832c and Rv2833c overlap by 8 nucleotides Rv2833c and Rv2834c are separated by 2 nucleotides Rv2834c and Rv2835c overlap by 4 nucleotides
Rv2832c: Rv2832c - Probable Sn-glycerol-3-phosphate transport ATP-binding protein ABC transporter UgpC, at 3,138,099 to 3,139,181
Rv2832c
Rv2833c: Rv2833c - Probable Sn-glycerol-3-phosphate-binding lipoprotein UgpB, at 3,139,174 to 3,140,484
Rv2833c
Rv2834c: Rv2834c - Probable Sn-glycerol-3-phosphate transport integral membrane protein ABC transporter UgpE, at 3,140,487 to 3,141,314
Rv2834c
Rv2835c: Rv2835c - Probable Sn-glycerol-3-phosphate transport integral membrane protein ABC transporter UgpA, at 3,141,311 to 3,142,222
Rv2835c
Position (kb)
3139
3140
3141 Strain fitness (log2 ratio)
-1
0
1 at 3139.925 kb on - strand, within Rv2833c at 3140.693 kb on - strand, within Rv2834c at 3141.146 kb on - strand, within Rv2834c at 3141.193 kb on + strand, within Rv2834c at 3141.193 kb on + strand, within Rv2834c at 3141.435 kb on + strand, within Rv2835c at 3141.435 kb on + strand, within Rv2835c at 3141.436 kb on - strand, within Rv2835c
Per-strain Table
Position Strand Gene LocusTag Fraction no stress control remove 3,139,925 - Rv2833c 0.57 -0.2 3,140,693 - Rv2834c 0.25 -0.5 3,141,146 - Rv2834c 0.80 -0.4 3,141,193 + Rv2834c 0.85 -1.0 3,141,193 + Rv2834c 0.85 -0.3 3,141,435 + Rv2835c 0.14 -0.2 3,141,435 + Rv2835c 0.14 -0.6 3,141,436 - Rv2835c 0.14 +0.3
Or see this region's nucleotide sequence