Experiment: no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv2725c and Rv2726c are separated by 16 nucleotides Rv2726c and Rv2727c are separated by 24 nucleotides Rv2727c and Rv2728c overlap by 4 nucleotides Rv2728c and Rv2729c are separated by 108 nucleotides
Rv2725c: Rv2725c - Probable GTP-binding protein HflX, at 3,037,427 to 3,038,914
Rv2725c
Rv2726c: Rv2726c - Probable diaminopimelate epimerase DapF (DAP epimerase), at 3,038,931 to 3,039,800
Rv2726c
Rv2727c: Rv2727c - Probable tRNA delta(2)-isopentenylpyrophosphate transferase MiaA (IPP transferase) (isopentenyl-diphosphate:tRNA isopentenyltransferase) (iptase) (IPPT), at 3,039,825 to 3,040,769
Rv2727c
Rv2728c: Rv2728c - Conserved alanine rich protein, at 3,040,766 to 3,041,461
Rv2728c
Rv2729c: Rv2729c - Probable conserved integral membrane alanine valine and leucine rich protein, at 3,041,570 to 3,042,475
Rv2729c
Position (kb)
3039
3040
3041 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3038.850 kb on + strand at 3038.850 kb on + strand at 3038.850 kb on + strand at 3038.850 kb on + strand at 3038.851 kb on - strand at 3038.851 kb on - strand at 3038.851 kb on - strand at 3038.857 kb on + strand at 3038.914 kb on + strand at 3038.914 kb on + strand at 3038.915 kb on - strand at 3040.819 kb on - strand at 3040.981 kb on - strand, within Rv2728c at 3041.031 kb on - strand, within Rv2728c at 3041.177 kb on - strand, within Rv2728c at 3041.196 kb on - strand, within Rv2728c at 3041.196 kb on - strand, within Rv2728c at 3041.473 kb on - strand at 3041.473 kb on - strand at 3041.473 kb on - strand at 3041.651 kb on + strand at 3041.651 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction no stress control remove 3,038,850 + +0.0 3,038,850 + -0.0 3,038,850 + +1.1 3,038,850 + -0.1 3,038,851 - -0.3 3,038,851 - +0.2 3,038,851 - -0.9 3,038,857 + +0.4 3,038,914 + +0.1 3,038,914 + +0.5 3,038,915 - -0.3 3,040,819 - -0.1 3,040,981 - Rv2728c 0.31 -0.2 3,041,031 - Rv2728c 0.38 +0.2 3,041,177 - Rv2728c 0.59 +2.8 3,041,196 - Rv2728c 0.62 -1.5 3,041,196 - Rv2728c 0.62 +0.1 3,041,473 - -0.4 3,041,473 - -0.4 3,041,473 - -0.6 3,041,651 + -1.8 3,041,651 + -0.2
Or see this region's nucleotide sequence