Experiment: no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv2675c and Rv2676c overlap by 4 nucleotides Rv2676c and Rv2677c are separated by 5 nucleotides Rv2677c and Rv2678c overlap by 4 nucleotides
Rv2675c: Rv2675c - Conserved hypothetical protein, at 2,991,184 to 2,991,936
Rv2675c
Rv2676c: Rv2676c - Conserved protein, at 2,991,933 to 2,992,628
Rv2676c
Rv2677c: Rv2677c - Probable protoporphyrinogen oxidase HemY (protoporphyrinogen-IX oxidase) (protoporphyrinogenase) (PPO), at 2,992,634 to 2,993,992
Rv2677c
Rv2678c: Rv2678c - Probable uroporphyrinogen decarboxylase HemE (uroporphyrinogen III decarboxylase) (URO-D) (UPD), at 2,993,989 to 2,995,062
Rv2678c
Position (kb)
2992
2993
2994 Strain fitness (log2 ratio)
-1
0
1 at 2991.719 kb on + strand, within Rv2675c at 2991.720 kb on - strand, within Rv2675c at 2991.735 kb on - strand, within Rv2675c at 2991.737 kb on + strand, within Rv2675c at 2991.738 kb on - strand, within Rv2675c at 2991.887 kb on + strand at 2991.887 kb on + strand at 2991.888 kb on - strand at 2991.888 kb on - strand at 2991.888 kb on - strand at 2991.888 kb on - strand at 2991.888 kb on - strand at 2991.888 kb on - strand at 2992.636 kb on - strand at 2992.636 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction no stress control remove 2,991,719 + Rv2675c 0.71 -0.2 2,991,720 - Rv2675c 0.71 -0.3 2,991,735 - Rv2675c 0.73 +0.6 2,991,737 + Rv2675c 0.73 +1.1 2,991,738 - Rv2675c 0.74 -0.2 2,991,887 + -0.4 2,991,887 + +0.2 2,991,888 - +0.1 2,991,888 - +0.2 2,991,888 - +0.2 2,991,888 - -0.4 2,991,888 - +0.0 2,991,888 - +0.1 2,992,636 - +0.6 2,992,636 - -0.8
Or see this region's nucleotide sequence