Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv2677c

Experiment: no stress control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRv2675c and Rv2676c overlap by 4 nucleotidesRv2676c and Rv2677c are separated by 5 nucleotidesRv2677c and Rv2678c overlap by 4 nucleotides Rv2675c: Rv2675c - Conserved hypothetical protein, at 2,991,184 to 2,991,936 Rv2675c Rv2676c: Rv2676c - Conserved protein, at 2,991,933 to 2,992,628 Rv2676c Rv2677c: Rv2677c - Probable protoporphyrinogen oxidase HemY (protoporphyrinogen-IX oxidase) (protoporphyrinogenase) (PPO), at 2,992,634 to 2,993,992 Rv2677c Rv2678c: Rv2678c - Probable uroporphyrinogen decarboxylase HemE (uroporphyrinogen III decarboxylase) (URO-D) (UPD), at 2,993,989 to 2,995,062 Rv2678c Position (kb) 2992 2993 2994Strain fitness (log2 ratio) -1 0 1at 2991.719 kb on + strand, within Rv2675cat 2991.720 kb on - strand, within Rv2675cat 2991.735 kb on - strand, within Rv2675cat 2991.737 kb on + strand, within Rv2675cat 2991.738 kb on - strand, within Rv2675cat 2991.887 kb on + strandat 2991.887 kb on + strandat 2991.888 kb on - strandat 2991.888 kb on - strandat 2991.888 kb on - strandat 2991.888 kb on - strandat 2991.888 kb on - strandat 2991.888 kb on - strandat 2992.636 kb on - strandat 2992.636 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
remove
2,991,719 + Rv2675c 0.71 -0.2
2,991,720 - Rv2675c 0.71 -0.3
2,991,735 - Rv2675c 0.73 +0.6
2,991,737 + Rv2675c 0.73 +1.1
2,991,738 - Rv2675c 0.74 -0.2
2,991,887 + -0.4
2,991,887 + +0.2
2,991,888 - +0.1
2,991,888 - +0.2
2,991,888 - +0.2
2,991,888 - -0.4
2,991,888 - +0.0
2,991,888 - +0.1
2,992,636 - +0.6
2,992,636 - -0.8

Or see this region's nucleotide sequence