Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv2652c

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRv2650c and Rv2651c are separated by 7 nucleotidesRv2651c and Rv2652c are separated by 152 nucleotidesRv2652c and Rv2653c are separated by 31 nucleotidesRv2653c and Rv2654c are separated by 79 nucleotidesRv2654c and Rv2655c overlap by 4 nucleotides Rv2650c: Rv2650c - Possible PhiRv2 prophage protein, at 2,973,795 to 2,975,234 Rv2650c Rv2651c: Rv2651c - Possible PhiRv2 prophage protease, at 2,975,242 to 2,975,775 Rv2651c Rv2652c: Rv2652c - Probable PhiRv2 prophage protein, at 2,975,928 to 2,976,554 Rv2652c Rv2653c: Rv2653c - Possible PhiRv2 prophage protein, at 2,976,586 to 2,976,909 Rv2653c Rv2654c: Rv2654c - Possible PhiRv2 prophage protein, at 2,976,989 to 2,977,234 Rv2654c Rv2655c: Rv2655c - Possible PhiRv2 prophage protein, at 2,977,231 to 2,978,658 Rv2655c Position (kb) 2975 2976 2977Strain fitness (log2 ratio) -1 0 1at 2975.228 kb on + strandat 2975.244 kb on - strandat 2976.487 kb on - strand, within Rv2652cat 2977.535 kb on + strand, within Rv2655cat 2977.535 kb on + strand, within Rv2655c

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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2,975,228 + +0.7
2,975,244 - -0.6
2,976,487 - Rv2652c 0.89 -0.3
2,977,535 + Rv2655c 0.21 +0.0
2,977,535 + Rv2655c 0.21 -0.3

Or see this region's nucleotide sequence