Experiment: no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv2579 and Rv2580c are separated by 279 nucleotides Rv2580c and Rv2581c overlap by 4 nucleotides Rv2581c and Rv2582 are separated by 50 nucleotides
Rv2579: Rv2579 - Possible haloalkane dehalogenase DhaA (1-chlorohexane halidohydrolase), at 2,903,639 to 2,904,541
Rv2579
Rv2580c: Rv2580c - Probable histidyl-tRNA synthetase HisS (histidine--tRNA ligase) (HISRS) (histidine--translase), at 2,904,821 to 2,906,092
Rv2580c
Rv2581c: Rv2581c - Possible glyoxalase II (hydroxyacylglutathione hydrolase) (GLX II), at 2,906,089 to 2,906,763
Rv2581c
Rv2582: Rv2582 - Probable peptidyl-prolyl cis-trans isomerase B PpiB (cyclophilin) (PPIase) (rotamase) (peptidylprolyl isomerase), at 2,906,814 to 2,907,740
Rv2582
Position (kb)
2904
2905
2906
2907 Strain fitness (log2 ratio)
-1
0
1 at 2903.880 kb on - strand, within Rv2579 at 2903.882 kb on - strand, within Rv2579 at 2903.882 kb on - strand, within Rv2579 at 2903.882 kb on - strand, within Rv2579 at 2903.885 kb on + strand, within Rv2579 at 2903.886 kb on - strand, within Rv2579 at 2903.886 kb on - strand, within Rv2579 at 2903.950 kb on - strand, within Rv2579 at 2906.490 kb on - strand, within Rv2581c at 2906.532 kb on - strand, within Rv2581c
Per-strain Table
Position Strand Gene LocusTag Fraction no stress control remove 2,903,880 - Rv2579 0.27 -0.3 2,903,882 - Rv2579 0.27 -0.4 2,903,882 - Rv2579 0.27 -1.2 2,903,882 - Rv2579 0.27 +0.5 2,903,885 + Rv2579 0.27 +1.7 2,903,886 - Rv2579 0.27 +0.0 2,903,886 - Rv2579 0.27 -0.8 2,903,950 - Rv2579 0.34 -0.3 2,906,490 - Rv2581c 0.59 -1.6 2,906,532 - Rv2581c 0.66 -1.5
Or see this region's nucleotide sequence