Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv2412

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRv2411c and Rv2412 are separated by 109 nucleotidesRv2412 and Rv2413c are separated by 15 nucleotidesRv2413c and Rv2414c are separated by 30 nucleotides Rv2411c: Rv2411c - Conserved hypothetical protein, at 2,708,310 to 2,709,965 Rv2411c Rv2412: Rv2412 - 30S ribosomal protein S20 RpsT, at 2,710,075 to 2,710,335 Rv2412 Rv2413c: Rv2413c - Conserved hypothetical protein, at 2,710,351 to 2,711,301 Rv2413c Rv2414c: Rv2414c - Conserved hypothetical protein, at 2,711,332 to 2,712,876 Rv2414c Position (kb) 2710 2711Strain fitness (log2 ratio) -1 0 1 2 3at 2709.112 kb on + strand, within Rv2411cat 2709.112 kb on + strand, within Rv2411cat 2709.112 kb on + strand, within Rv2411cat 2709.112 kb on + strand, within Rv2411cat 2709.113 kb on - strand, within Rv2411cat 2709.113 kb on - strand, within Rv2411cat 2709.113 kb on - strand, within Rv2411cat 2709.113 kb on - strand, within Rv2411cat 2709.113 kb on - strand, within Rv2411cat 2709.113 kb on - strand, within Rv2411cat 2709.113 kb on - strand, within Rv2411cat 2709.113 kb on - strand, within Rv2411cat 2709.113 kb on - strand, within Rv2411cat 2709.114 kb on + strand, within Rv2411cat 2709.114 kb on + strand, within Rv2411cat 2709.115 kb on - strand, within Rv2411cat 2709.115 kb on - strand, within Rv2411cat 2709.208 kb on + strand, within Rv2411cat 2709.209 kb on - strand, within Rv2411cat 2709.209 kb on - strand, within Rv2411cat 2709.295 kb on + strand, within Rv2411cat 2709.296 kb on - strand, within Rv2411cat 2709.296 kb on - strand, within Rv2411cat 2709.376 kb on + strand, within Rv2411cat 2709.376 kb on + strand, within Rv2411cat 2709.377 kb on - strand, within Rv2411cat 2709.377 kb on - strand, within Rv2411cat 2709.377 kb on - strand, within Rv2411cat 2709.577 kb on + strand, within Rv2411cat 2709.577 kb on + strand, within Rv2411cat 2709.577 kb on + strand, within Rv2411cat 2709.578 kb on - strand, within Rv2411cat 2709.578 kb on - strand, within Rv2411cat 2709.592 kb on + strand, within Rv2411cat 2709.593 kb on - strand, within Rv2411cat 2709.593 kb on - strand, within Rv2411cat 2709.799 kb on + strand, within Rv2411cat 2709.799 kb on + strand, within Rv2411cat 2709.799 kb on + strand, within Rv2411cat 2709.799 kb on + strand, within Rv2411cat 2709.803 kb on + strandat 2709.803 kb on + strandat 2709.865 kb on + strandat 2709.883 kb on + strandat 2711.308 kb on - strandat 2711.308 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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2,709,112 + Rv2411c 0.48 +1.1
2,709,112 + Rv2411c 0.48 -0.3
2,709,112 + Rv2411c 0.48 +0.0
2,709,112 + Rv2411c 0.48 -0.0
2,709,113 - Rv2411c 0.48 -0.2
2,709,113 - Rv2411c 0.48 -0.1
2,709,113 - Rv2411c 0.48 -0.3
2,709,113 - Rv2411c 0.48 +0.1
2,709,113 - Rv2411c 0.48 -0.5
2,709,113 - Rv2411c 0.48 -1.2
2,709,113 - Rv2411c 0.48 -0.3
2,709,113 - Rv2411c 0.48 -0.4
2,709,113 - Rv2411c 0.48 +0.2
2,709,114 + Rv2411c 0.49 +0.6
2,709,114 + Rv2411c 0.49 -0.1
2,709,115 - Rv2411c 0.49 +0.2
2,709,115 - Rv2411c 0.49 +0.0
2,709,208 + Rv2411c 0.54 -0.2
2,709,209 - Rv2411c 0.54 -0.2
2,709,209 - Rv2411c 0.54 -0.2
2,709,295 + Rv2411c 0.59 +0.1
2,709,296 - Rv2411c 0.60 -0.2
2,709,296 - Rv2411c 0.60 +0.7
2,709,376 + Rv2411c 0.64 +0.7
2,709,376 + Rv2411c 0.64 -0.4
2,709,377 - Rv2411c 0.64 -0.0
2,709,377 - Rv2411c 0.64 +1.6
2,709,377 - Rv2411c 0.64 -1.2
2,709,577 + Rv2411c 0.77 +1.8
2,709,577 + Rv2411c 0.77 -0.8
2,709,577 + Rv2411c 0.77 -0.5
2,709,578 - Rv2411c 0.77 -0.5
2,709,578 - Rv2411c 0.77 +1.8
2,709,592 + Rv2411c 0.77 +0.5
2,709,593 - Rv2411c 0.77 +0.7
2,709,593 - Rv2411c 0.77 +2.8
2,709,799 + Rv2411c 0.90 -0.3
2,709,799 + Rv2411c 0.90 +0.0
2,709,799 + Rv2411c 0.90 -0.6
2,709,799 + Rv2411c 0.90 -0.5
2,709,803 + +0.3
2,709,803 + +0.1
2,709,865 + +0.7
2,709,883 + -0.4
2,711,308 - -1.3
2,711,308 - -0.1

Or see this region's nucleotide sequence