Experiment: no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv2357c and Rv2358 are separated by 181 nucleotides Rv2358 and Rv2359 overlap by 4 nucleotides Rv2359 and Rv2360c are separated by 107 nucleotides Rv2360c and Rv2361c overlap by 1 nucleotides
Rv2357c: Rv2357c - Probable glycyl-tRNA synthetase GlyS (glycine--tRNA ligase) (GLYRS), at 2,639,673 to 2,641,064
Rv2357c
Rv2358: Rv2358 - Probable transcriptional regulatory protein SmtB (probably ArsR-family), at 2,641,246 to 2,641,653
Rv2358
Rv2359: Rv2359 - Probable zinc uptake regulation protein Zur, at 2,641,650 to 2,642,042
Rv2359
Rv2360c: Rv2360c - Unknown protein, at 2,642,150 to 2,642,578
Rv2360c
Rv2361c: Rv2361c - Long (C50) chain Z-isoprenyl diphosphate synthase (Z-decaprenyl diphosphate synthase), at 2,642,578 to 2,643,468
Rv2361c
Position (kb)
2641
2642
2643 Strain fitness (log2 ratio)
-2
-1
0
1 at 2641.154 kb on - strand at 2641.213 kb on + strand at 2641.213 kb on + strand at 2641.213 kb on + strand at 2641.216 kb on + strand at 2641.245 kb on + strand at 2641.245 kb on + strand at 2641.304 kb on + strand, within Rv2358 at 2641.304 kb on + strand, within Rv2358 at 2641.379 kb on + strand, within Rv2358 at 2642.483 kb on - strand, within Rv2360c at 2642.483 kb on - strand, within Rv2360c at 2642.579 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction no stress control remove 2,641,154 - -0.9 2,641,213 + +0.3 2,641,213 + +0.6 2,641,213 + -0.6 2,641,216 + -0.3 2,641,245 + -0.2 2,641,245 + -1.9 2,641,304 + Rv2358 0.14 +0.3 2,641,304 + Rv2358 0.14 +0.0 2,641,379 + Rv2358 0.33 -0.0 2,642,483 - Rv2360c 0.78 -1.0 2,642,483 - Rv2360c 0.78 -0.2 2,642,579 + -1.2
Or see this region's nucleotide sequence