Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv2201

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRv2200c and Rv2201 are separated by 245 nucleotidesRv2201 and Rv2202c are separated by 97 nucleotides Rv2200c: Rv2200c - Probable transmembrane cytochrome C oxidase (subunit II) CtaC, at 2,463,660 to 2,464,751 Rv2200c Rv2201: Rv2201 - Probable asparagine synthetase AsnB, at 2,464,997 to 2,466,955 Rv2201 Rv2202c: Rv2202c - Adenosine kinase, at 2,467,053 to 2,468,027 Rv2202c Position (kb) 2464 2465 2466 2467Strain fitness (log2 ratio) -1 0 1at 2464.768 kb on - strandat 2464.840 kb on - strandat 2464.849 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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2,464,768 - +0.1
2,464,840 - -0.4
2,464,849 - +0.1

Or see this region's nucleotide sequence