Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv2193

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRv2192c and Rv2193 are separated by 157 nucleotidesRv2193 and Rv2194 are separated by 40 nucleotidesRv2194 and Rv2195 overlap by 4 nucleotides Rv2192c: Rv2192c - Probable anthranilate phosphoribosyltransferase TrpD, at 2,455,631 to 2,456,743 Rv2192c Rv2193: Rv2193 - Probable cytochrome C oxidase (subunit III) CtaE, at 2,456,901 to 2,457,512 Rv2193 Rv2194: Rv2194 - Probable ubiquinol-cytochrome C reductase QcrC (cytochrome C subunit), at 2,457,553 to 2,458,395 Rv2194 Rv2195: Rv2195 - Probable rieske iron-sulfur protein QcrA, at 2,458,392 to 2,459,681 Rv2195 Position (kb) 2456 2457 2458Strain fitness (log2 ratio) -1 0 1at 2458.423 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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2,458,423 + -0.6

Or see this region's nucleotide sequence