Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1659

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRv1658 and Rv1659 are separated by 79 nucleotidesRv1659 and Rv1660 are separated by 108 nucleotides Rv1658: Rv1658 - Probable argininosuccinate synthase ArgG, at 1,871,363 to 1,872,559 Rv1658 Rv1659: Rv1659 - Probable argininosuccinate lyase ArgH, at 1,872,639 to 1,874,051 Rv1659 Rv1660: Rv1660 - Chalcone synthase Pks10, at 1,874,160 to 1,875,221 Rv1660 Position (kb) 1872 1873 1874 1875Strain fitness (log2 ratio) -1 0 1at 1874.199 kb on + strandat 1874.259 kb on + strandat 1874.334 kb on + strand, within Rv1660at 1874.335 kb on - strand, within Rv1660at 1874.611 kb on - strand, within Rv1660at 1874.674 kb on - strand, within Rv1660at 1874.820 kb on + strand, within Rv1660at 1874.821 kb on - strand, within Rv1660at 1874.913 kb on + strand, within Rv1660at 1874.914 kb on - strand, within Rv1660at 1874.914 kb on - strand, within Rv1660

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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1,874,199 + -1.1
1,874,259 + -0.4
1,874,334 + Rv1660 0.16 -0.4
1,874,335 - Rv1660 0.16 +0.2
1,874,611 - Rv1660 0.42 +0.4
1,874,674 - Rv1660 0.48 -0.2
1,874,820 + Rv1660 0.62 -0.8
1,874,821 - Rv1660 0.62 -0.1
1,874,913 + Rv1660 0.71 +0.4
1,874,914 - Rv1660 0.71 -0.2
1,874,914 - Rv1660 0.71 -0.1

Or see this region's nucleotide sequence