Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1594

Experiment: no stress control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRv1593c and Rv1594 are separated by 48 nucleotidesRv1594 and Rv1595 overlap by 1 nucleotides Rv1593c: Rv1593c - Conserved protein, at 1,793,997 to 1,794,707 Rv1593c Rv1594: Rv1594 - Probable quinolinate synthetase NadA, at 1,794,756 to 1,795,805 Rv1594 Rv1595: Rv1595 - Probable L-aspartate oxidase NadB, at 1,795,805 to 1,797,388 Rv1595 Position (kb) 1794 1795 1796Strain fitness (log2 ratio) -1 0 1 2at 1793.903 kb on + strandat 1793.948 kb on + strandat 1794.045 kb on + strandat 1794.046 kb on - strandat 1794.067 kb on + strandat 1794.179 kb on - strand, within Rv1593cat 1794.403 kb on + strand, within Rv1593cat 1794.404 kb on - strand, within Rv1593cat 1794.404 kb on - strand, within Rv1593cat 1794.404 kb on - strand, within Rv1593cat 1794.469 kb on - strand, within Rv1593c

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
remove
1,793,903 + -0.1
1,793,948 + -0.2
1,794,045 + -0.2
1,794,046 - +0.8
1,794,067 + +1.8
1,794,179 - Rv1593c 0.26 -0.1
1,794,403 + Rv1593c 0.57 -1.7
1,794,404 - Rv1593c 0.57 -0.4
1,794,404 - Rv1593c 0.57 -0.6
1,794,404 - Rv1593c 0.57 -0.2
1,794,469 - Rv1593c 0.66 -0.3

Or see this region's nucleotide sequence