Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1572c

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRv1570 and Rv1571 overlap by 1 nucleotidesRv1571 and Rv1572c are separated by 145 nucleotidesRv1572c and Rv1573 are separated by 15 nucleotidesRv1573 and Rv1574 are separated by 205 nucleotidesRv1574 and Rv1575 overlap by 43 nucleotides Rv1570: Rv1570 - Dethiobiotin synthetase BioD, at 1,777,859 to 1,778,539 Rv1570 Rv1571: Rv1571 - Conserved protein, at 1,778,539 to 1,779,048 Rv1571 Rv1572c: Rv1572c - Conserved hypothetical protein, at 1,779,194 to 1,779,298 Rv1572c Rv1573: Rv1573 - Probable PhiRv1 phage protein, at 1,779,314 to 1,779,724 Rv1573 Rv1574: Rv1574 - Probable PhiRv1 phage related protein, at 1,779,930 to 1,780,241 Rv1574 Rv1575: Rv1575 - Probable PhiRv1 phage protein, at 1,780,199 to 1,780,699 Rv1575 Position (kb) 1779 1780Strain fitness (log2 ratio) -1 0 1 2at 1778.429 kb on - strand, within Rv1570at 1778.429 kb on - strand, within Rv1570at 1779.231 kb on - strand, within Rv1572cat 1779.804 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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1,778,429 - Rv1570 0.84 +0.9
1,778,429 - Rv1570 0.84 -0.5
1,779,231 - Rv1572c 0.35 +2.1
1,779,804 + +0.1

Or see this region's nucleotide sequence