Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1348

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRv1347c and GFF1405 are separated by 122 nucleotidesGFF1405 and Rv1348 are separated by 235 nucleotidesRv1348 and Rv1349 overlap by 4 nucleotides Rv1347c: Rv1347c - Lysine N-acetyltransferase MbtK, at 1,511,973 to 1,512,605 Rv1347c GFF1405 - tRNA-Leu, at 1,512,728 to 1,512,811 GFF1405 Rv1348: Rv1348 - Iron-regulated transporter IrtA, at 1,513,047 to 1,515,626 Rv1348 Rv1349: Rv1349 - Iron-regulated transporter IrtB, at 1,515,623 to 1,517,362 Rv1349 Position (kb) 1513 1514 1515 1516Strain fitness (log2 ratio) -1 0 1 2at 1512.892 kb on + strandat 1512.892 kb on + strandat 1512.907 kb on + strandat 1515.672 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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1,512,892 + +1.8
1,512,892 + -0.5
1,512,907 + -0.7
1,515,672 + +0.2

Or see this region's nucleotide sequence