Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1311

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRv1310 and Rv1311 are separated by 13 nucleotidesRv1311 and Rv1312 are separated by 7 nucleotidesRv1312 and Rv1313c are separated by 39 nucleotides Rv1310: Rv1310 - Probable ATP synthase beta chain AtpD, at 1,465,841 to 1,467,301 Rv1310 Rv1311: Rv1311 - Probable ATP synthase epsilon chain AtpC, at 1,467,315 to 1,467,680 Rv1311 Rv1312: Rv1312 - Conserved hypothetical secreted protein, at 1,467,688 to 1,468,131 Rv1312 Rv1313c: Rv1313c - Possible transposase, at 1,468,171 to 1,469,505 Rv1313c Position (kb) 1467 1468Strain fitness (log2 ratio) -1 0 1at 1468.122 kb on + strandat 1468.122 kb on + strandat 1468.125 kb on + strandat 1468.173 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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1,468,122 + +1.5
1,468,122 + -0.3
1,468,125 + -0.9
1,468,173 - +0.5

Or see this region's nucleotide sequence