Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1301

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRv1299 and Rv1300 overlap by 4 nucleotidesRv1300 and Rv1301 are separated by 15 nucleotidesRv1301 and Rv1302 are separated by 83 nucleotides Rv1299: Rv1299 - Probable peptide chain release factor 1 PrfA (RF-1), at 1,455,495 to 1,456,568 Rv1299 Rv1300: Rv1300 - Probable HemK protein homolog HemK, at 1,456,565 to 1,457,542 Rv1300 Rv1301: Rv1301 - Conserved protein, at 1,457,558 to 1,458,211 Rv1301 Rv1302: Rv1302 - Probable undecapaprenyl-phosphate alpha-N-acetylglucosaminyltransferase Rfe (UDP-GlcNAc transferase), at 1,458,295 to 1,459,509 Rv1302 Position (kb) 1457 1458 1459Strain fitness (log2 ratio) -1 0 1at 1458.302 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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1,458,302 - -1.4

Or see this region's nucleotide sequence