Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1197

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRv1196 and Rv1197 are separated by 134 nucleotidesRv1197 and Rv1198 are separated by 50 nucleotidesRv1198 and Rv1199c are separated by 67 nucleotides Rv1196: Rv1196 - PPE family protein PPE18, at 1,339,349 to 1,340,524 Rv1196 Rv1197: Rv1197 - ESAT-6 like protein EsxK (ESAT-6 like protein 3), at 1,340,659 to 1,340,955 Rv1197 Rv1198: Rv1198 - Putative ESAT-6 like protein EsxL (ESAT-6 like protein 4), at 1,341,006 to 1,341,290 Rv1198 Rv1199c: Rv1199c - Possible transposase, at 1,341,358 to 1,342,605 Rv1199c Position (kb) 1340 1341Strain fitness (log2 ratio) -1 0 1at 1340.492 kb on + strandat 1340.492 kb on + strandat 1340.493 kb on - strandat 1340.493 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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1,340,492 + -0.6
1,340,492 + -0.1
1,340,493 - -0.3
1,340,493 - -0.1

Or see this region's nucleotide sequence