Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1094

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRv1093 and Rv1094 are separated by 104 nucleotidesRv1094 and Rv1095 are separated by 210 nucleotides Rv1093: Rv1093 - Serine hydroxymethyltransferase 1 GlyA1, at 1,220,574 to 1,221,854 Rv1093 Rv1094: Rv1094 - Possible acyl-[acyl-carrier protein] desaturase DesA2 (acyl-[ACP] desaturase) (stearoyl-ACP desaturase), at 1,221,959 to 1,222,786 Rv1094 Rv1095: Rv1095 - Probable PHOH-like protein PhoH2 (phosphate starvation-inducible protein PSIH), at 1,222,997 to 1,224,298 Rv1095 Position (kb) 1221 1222 1223Strain fitness (log2 ratio) -1 0 1at 1221.947 kb on + strandat 1221.947 kb on + strandat 1221.948 kb on - strandat 1222.818 kb on - strandat 1223.016 kb on - strandat 1223.016 kb on - strandat 1223.427 kb on - strand, within Rv1095at 1223.547 kb on + strand, within Rv1095

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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1,221,947 + +0.2
1,221,947 + -0.4
1,221,948 - -0.5
1,222,818 - -0.3
1,223,016 - +0.3
1,223,016 - -0.5
1,223,427 - Rv1095 0.33 +0.5
1,223,547 + Rv1095 0.42 -0.8

Or see this region's nucleotide sequence