Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv0945

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRv0943c and Rv0944 are separated by 28 nucleotidesRv0944 and Rv0945 are separated by 5 nucleotidesRv0945 and Rv0946c are separated by 15 nucleotides Rv0943c: Rv0943c - Probable monooxygenase, at 1,052,696 to 1,053,736 Rv0943c Rv0944: Rv0944 - Possible formamidopyrimidine-DNA glycosylase (FAPY-DNA glycosylase), at 1,053,765 to 1,054,241 Rv0944 Rv0945: Rv0945 - Probable short-chain type dehydrogenase/reductase, at 1,054,247 to 1,055,008 Rv0945 Rv0946c: Rv0946c - Probable glucose-6-phosphate isomerase Pgi (GPI) (phosphoglucose isomerase) (phosphohexose isomerase) (phi), at 1,055,024 to 1,056,685 Rv0946c Position (kb) 1054 1055 1056Strain fitness (log2 ratio) -1 0 1at 1053.336 kb on + strand, within Rv0943cat 1053.458 kb on + strand, within Rv0943cat 1053.491 kb on + strand, within Rv0943cat 1053.567 kb on + strand, within Rv0943cat 1053.915 kb on - strand, within Rv0944at 1053.915 kb on - strand, within Rv0944at 1054.094 kb on - strand, within Rv0944at 1054.246 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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1,053,336 + Rv0943c 0.61 +0.9
1,053,458 + Rv0943c 0.73 -0.3
1,053,491 + Rv0943c 0.76 -0.2
1,053,567 + Rv0943c 0.84 +0.8
1,053,915 - Rv0944 0.31 -1.1
1,053,915 - Rv0944 0.31 -0.3
1,054,094 - Rv0944 0.69 -1.0
1,054,246 + -0.5

Or see this region's nucleotide sequence