Experiment: no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0880 and Rv0881 overlap by 4 nucleotides Rv0881 and Rv0882 overlap by 4 nucleotides Rv0882 and Rv0883c overlap by 4 nucleotides Rv0883c and Rv0884c are separated by 156 nucleotides
Rv0880: Rv0880 - Possible transcriptional regulatory protein (possibly MarR-family), at 978,934 to 979,365
Rv0880
Rv0881: Rv0881 - Possible rRNA methyltransferase (rRNA methylase), at 979,362 to 980,228
Rv0881
Rv0882: Rv0882 - Probable transmembrane protein, at 980,225 to 980,509
Rv0882
Rv0883c: Rv0883c - Conserved hypothetical protein, at 980,506 to 981,267
Rv0883c
Rv0884c: Rv0884c - Possible phosphoserine aminotransferase SerC (PSAT), at 981,424 to 982,554
Rv0884c
Position (kb) 980
981 Strain fitness (log2 ratio) -1
0
1
2 at 979.630 kb on - strand, within Rv0881 at 979.630 kb on - strand, within Rv0881 at 979.869 kb on + strand, within Rv0881 at 979.917 kb on + strand, within Rv0881 at 979.950 kb on - strand, within Rv0881 at 980.185 kb on - strand at 980.185 kb on - strand at 980.196 kb on - strand at 981.312 kb on - strand at 981.312 kb on - strand at 981.324 kb on + strand at 981.324 kb on + strand at 981.325 kb on - strand at 981.325 kb on - strand at 981.415 kb on - strand at 981.415 kb on - strand at 981.425 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction no stress control remove 979,630 - Rv0881 0.31 -0.9 979,630 - Rv0881 0.31 -0.7 979,869 + Rv0881 0.58 -0.4 979,917 + Rv0881 0.64 +0.1 979,950 - Rv0881 0.68 -0.3 980,185 - +0.2 980,185 - +1.0 980,196 - -0.4 981,312 - -0.4 981,312 - +1.9 981,324 + +0.3 981,324 + -0.8 981,325 - +0.2 981,325 - +1.9 981,415 - -0.1 981,415 - +0.9 981,425 + -0.1
Or see this region's nucleotide sequence