Experiment: no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0826 and Rv0827c are separated by 51 nucleotides Rv0827c and Rv0828c are separated by 57 nucleotides Rv0828c and Rv0829 overlap by 39 nucleotides Rv0829 and Rv0830 are separated by 104 nucleotides
Rv0826: Rv0826 - Conserved hypothetical protein, at 919,634 to 920,689
Rv0826
Rv0827c: Rv0827c - Metal sensor transcriptional regulator KmtR (ArsR-SmtB family), at 920,741 to 921,133
Rv0827c
Rv0828c: Rv0828c - Possible deaminase, at 921,191 to 921,613
Rv0828c
Rv0829: Rv0829 - Possible transposase (fragment), at 921,575 to 921,865
Rv0829
Rv0830: Rv0830 - Possible S-adenosylmethionine-dependent methyltransferase, at 921,970 to 922,875
Rv0830
Position (kb) 920
921
922 Strain fitness (log2 ratio) -2
-1
0
1
2 at 919.766 kb on + strand, within Rv0826 at 919.815 kb on - strand, within Rv0826 at 919.870 kb on + strand, within Rv0826 at 919.870 kb on + strand, within Rv0826 at 919.870 kb on + strand, within Rv0826 at 919.952 kb on + strand, within Rv0826 at 919.953 kb on - strand, within Rv0826 at 919.953 kb on - strand, within Rv0826 at 920.018 kb on + strand, within Rv0826 at 920.018 kb on + strand, within Rv0826 at 920.019 kb on - strand, within Rv0826 at 920.060 kb on + strand, within Rv0826 at 920.088 kb on - strand, within Rv0826 at 920.088 kb on - strand, within Rv0826 at 920.176 kb on - strand, within Rv0826 at 920.198 kb on + strand, within Rv0826 at 920.207 kb on + strand, within Rv0826 at 920.208 kb on - strand, within Rv0826 at 920.259 kb on - strand, within Rv0826 at 920.429 kb on + strand, within Rv0826 at 920.430 kb on - strand, within Rv0826 at 920.613 kb on + strand at 920.613 kb on + strand at 920.616 kb on + strand at 920.616 kb on + strand at 920.617 kb on - strand at 920.617 kb on - strand at 920.617 kb on - strand at 920.617 kb on - strand at 920.617 kb on - strand at 920.617 kb on - strand at 920.672 kb on + strand at 920.673 kb on - strand at 920.734 kb on - strand at 920.734 kb on - strand at 921.122 kb on - strand at 921.122 kb on - strand at 921.122 kb on - strand at 921.133 kb on + strand at 921.145 kb on - strand at 921.382 kb on - strand, within Rv0828c at 921.393 kb on + strand, within Rv0828c at 921.394 kb on - strand, within Rv0828c at 921.438 kb on + strand, within Rv0828c at 921.438 kb on + strand, within Rv0828c at 921.438 kb on + strand, within Rv0828c at 921.439 kb on - strand, within Rv0828c at 921.439 kb on - strand, within Rv0828c at 921.439 kb on - strand, within Rv0828c at 921.441 kb on + strand, within Rv0828c at 921.441 kb on + strand, within Rv0828c at 921.441 kb on + strand, within Rv0828c at 921.442 kb on - strand, within Rv0828c at 921.442 kb on - strand, within Rv0828c at 921.442 kb on - strand, within Rv0828c at 921.442 kb on - strand, within Rv0828c at 921.442 kb on - strand, within Rv0828c at 921.856 kb on - strand at 921.856 kb on - strand at 921.944 kb on + strand at 921.975 kb on - strand at 921.975 kb on - strand at 922.090 kb on + strand, within Rv0830 at 922.091 kb on - strand, within Rv0830 at 922.119 kb on + strand, within Rv0830 at 922.119 kb on + strand, within Rv0830 at 922.120 kb on - strand, within Rv0830 at 922.120 kb on - strand, within Rv0830 at 922.120 kb on - strand, within Rv0830
Per-strain Table
Position Strand Gene LocusTag Fraction no stress control remove 919,766 + Rv0826 0.12 -0.1 919,815 - Rv0826 0.17 -0.2 919,870 + Rv0826 0.22 +0.6 919,870 + Rv0826 0.22 -0.8 919,870 + Rv0826 0.22 -0.6 919,952 + Rv0826 0.30 -0.3 919,953 - Rv0826 0.30 +1.4 919,953 - Rv0826 0.30 +0.5 920,018 + Rv0826 0.36 -0.5 920,018 + Rv0826 0.36 +0.1 920,019 - Rv0826 0.36 -1.0 920,060 + Rv0826 0.40 -0.6 920,088 - Rv0826 0.43 -0.1 920,088 - Rv0826 0.43 -1.7 920,176 - Rv0826 0.51 +0.4 920,198 + Rv0826 0.53 -0.3 920,207 + Rv0826 0.54 -0.1 920,208 - Rv0826 0.54 -0.6 920,259 - Rv0826 0.59 +0.3 920,429 + Rv0826 0.75 -0.4 920,430 - Rv0826 0.75 -0.2 920,613 + -0.1 920,613 + +0.8 920,616 + +0.3 920,616 + -1.3 920,617 - -0.7 920,617 - -0.1 920,617 - +0.1 920,617 - -0.0 920,617 - -0.8 920,617 - +0.8 920,672 + +1.8 920,673 - -0.2 920,734 - +0.2 920,734 - +0.2 921,122 - -0.4 921,122 - -0.5 921,122 - -0.5 921,133 + -0.7 921,145 - +0.3 921,382 - Rv0828c 0.45 -0.4 921,393 + Rv0828c 0.48 -0.4 921,394 - Rv0828c 0.48 -0.5 921,438 + Rv0828c 0.58 +0.3 921,438 + Rv0828c 0.58 -1.8 921,438 + Rv0828c 0.58 -0.7 921,439 - Rv0828c 0.59 +1.2 921,439 - Rv0828c 0.59 -0.1 921,439 - Rv0828c 0.59 -0.2 921,441 + Rv0828c 0.59 +1.5 921,441 + Rv0828c 0.59 -0.1 921,441 + Rv0828c 0.59 -0.5 921,442 - Rv0828c 0.59 -0.6 921,442 - Rv0828c 0.59 -0.2 921,442 - Rv0828c 0.59 +0.5 921,442 - Rv0828c 0.59 -0.5 921,442 - Rv0828c 0.59 -0.4 921,856 - -0.4 921,856 - -0.2 921,944 + -0.2 921,975 - +0.1 921,975 - -0.7 922,090 + Rv0830 0.13 -0.4 922,091 - Rv0830 0.13 -0.1 922,119 + Rv0830 0.16 -0.2 922,119 + Rv0830 0.16 +0.1 922,120 - Rv0830 0.17 -0.0 922,120 - Rv0830 0.17 +0.2 922,120 - Rv0830 0.17 +0.1
Or see this region's nucleotide sequence