Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv0797

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRv0796 and Rv0797 are separated by 54 nucleotidesRv0797 and Rv0798c overlap by 11 nucleotidesRv0798c and Rv0799c overlap by 4 nucleotides Rv0795: Rv0795 - Putative transposase for insertion sequence element IS6110 (fragment), at 889,072 to 889,398 Rv0795 Rv0796: Rv0796 - Putative transposase for insertion sequence element IS6110, at 889,347 to 890,333 Rv0796 Rv0797: Rv0797 - Putative transposase for insertion sequence element IS1547, at 890,388 to 891,482 Rv0797 Rv0798c: Rv0798c - 29 KDa antigen CFP29, at 891,472 to 892,269 Rv0798c Rv0799c: Rv0799c - Conserved protein, at 892,266 to 893,273 Rv0799c Position (kb) 890 891 892Strain fitness (log2 ratio) -1 0 1at 891.453 kb on + strandat 891.598 kb on + strand, within Rv0798cat 891.737 kb on + strand, within Rv0798cat 891.914 kb on - strand, within Rv0798cat 892.024 kb on - strand, within Rv0798c

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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891,453 + -0.0
891,598 + Rv0798c 0.16 -0.6
891,737 + Rv0798c 0.33 -0.3
891,914 - Rv0798c 0.55 -0.4
892,024 - Rv0798c 0.69 -0.5

Or see this region's nucleotide sequence