Experiment: no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0718 and Rv0719 are separated by 23 nucleotides Rv0719 and Rv0720 are separated by 2 nucleotides Rv0720 and Rv0721 are separated by 19 nucleotides Rv0721 and Rv0722 are separated by 2 nucleotides Rv0722 and Rv0723 overlap by 1 nucleotides Rv0723 and Rv0724 are separated by 32 nucleotides
Rv0718: Rv0718 - 30S ribosomal protein S8 RpsH, at 812,976 to 813,374
Rv0718
Rv0719: Rv0719 - 50S ribosomal protein L6 RplF, at 813,398 to 813,937
Rv0719
Rv0720: Rv0720 - 50S ribosomal protein L18 RplR, at 813,940 to 814,308
Rv0720
Rv0721: Rv0721 - 30S ribosomal protein S5 RpsE, at 814,328 to 814,990
Rv0721
Rv0722: Rv0722 - 50S ribosomal protein L30 RpmD, at 814,993 to 815,190
Rv0722
Rv0723: Rv0723 - 50S ribosomal protein L15 RplO, at 815,190 to 815,630
Rv0723
Rv0724: Rv0724 - Possible protease IV SppA (endopeptidase IV) (signal peptide peptidase), at 815,663 to 817,534
Rv0724
Position (kb) 814
815 Strain fitness (log2 ratio) -1
0
1
2 at 814.988 kb on + strand at 814.988 kb on + strand at 815.628 kb on + strand at 815.629 kb on - strand at 815.718 kb on + strand at 815.719 kb on - strand at 815.731 kb on + strand at 815.731 kb on + strand at 815.732 kb on - strand at 815.772 kb on + strand at 815.772 kb on + strand at 815.817 kb on + strand at 815.887 kb on + strand, within Rv0724
Per-strain Table
Position Strand Gene LocusTag Fraction no stress control remove 814,988 + -0.3 814,988 + -0.6 815,628 + +0.9 815,629 - -0.1 815,718 + -1.0 815,719 - -0.1 815,731 + +0.5 815,731 + -0.3 815,732 - +1.8 815,772 + -0.1 815,772 + -0.6 815,817 + -0.2 815,887 + Rv0724 0.12 -0.0
Or see this region's nucleotide sequence