Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv0620

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRv0618 and Rv0619 overlap by 58 nucleotidesRv0619 and Rv0620 overlap by 4 nucleotidesRv0620 and Rv0621 are separated by 394 nucleotides Rv0618: Rv0618 - Probable galactose-1-phosphate uridylyltransferase GalTa [first part], at 711,536 to 712,231 Rv0618 Rv0619: Rv0619 - Probable galactose-1-phosphate uridylyltransferase GalTb [second part], at 712,174 to 712,719 Rv0619 Rv0620: Rv0620 - Probable galactokinase GalK (galactose kinase), at 712,716 to 713,807 Rv0620 Rv0621: Rv0621 - Possible membrane protein, at 714,202 to 715,266 Rv0621 Position (kb) 712 713 714Strain fitness (log2 ratio) -1 0 1at 711.905 kb on + strand, within Rv0618at 712.214 kb on - strandat 712.225 kb on + strandat 713.145 kb on + strand, within Rv0620at 714.061 kb on - strandat 714.290 kb on + strandat 714.290 kb on + strandat 714.291 kb on - strandat 714.291 kb on - strandat 714.322 kb on + strand, within Rv0621

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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711,905 + Rv0618 0.53 -0.1
712,214 - -0.1
712,225 + -0.4
713,145 + Rv0620 0.39 -0.4
714,061 - +0.7
714,290 + -0.8
714,290 + -0.4
714,291 - -0.2
714,291 - +0.1
714,322 + Rv0621 0.11 +0.3

Or see this region's nucleotide sequence