Experiment: no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0617 and Rv0618 are separated by 128 nucleotides Rv0618 and Rv0619 overlap by 58 nucleotides Rv0619 and Rv0620 overlap by 4 nucleotides
Rv0617: Rv0617 - Possible toxin VapC29. Contains PIN domain., at 711,006 to 711,407
Rv0617
Rv0618: Rv0618 - Probable galactose-1-phosphate uridylyltransferase GalTa [first part], at 711,536 to 712,231
Rv0618
Rv0619: Rv0619 - Probable galactose-1-phosphate uridylyltransferase GalTb [second part], at 712,174 to 712,719
Rv0619
Rv0620: Rv0620 - Probable galactokinase GalK (galactose kinase), at 712,716 to 713,807
Rv0620
Position (kb) 712
713 Strain fitness (log2 ratio) -1
0
1
2 at 711.300 kb on + strand, within Rv0617 at 711.301 kb on - strand, within Rv0617 at 711.301 kb on - strand, within Rv0617 at 711.470 kb on + strand at 711.476 kb on + strand at 711.477 kb on - strand at 711.477 kb on - strand at 711.477 kb on - strand at 711.905 kb on + strand, within Rv0618 at 712.214 kb on - strand at 712.225 kb on + strand at 713.145 kb on + strand, within Rv0620
Per-strain Table
Position Strand Gene LocusTag Fraction no stress control remove 711,300 + Rv0617 0.73 -1.7 711,301 - Rv0617 0.73 -0.7 711,301 - Rv0617 0.73 +1.2 711,470 + +2.6 711,476 + +0.6 711,477 - +0.8 711,477 - +0.1 711,477 - +0.9 711,905 + Rv0618 0.53 -0.1 712,214 - -0.1 712,225 + -0.4 713,145 + Rv0620 0.39 -0.4
Or see this region's nucleotide sequence