Experiment: no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0598c and Rv0599c overlap by 4 nucleotides Rv0599c and Rv0600c are separated by 103 nucleotides Rv0600c and Rv0601c are separated by 113 nucleotides Rv0601c and Rv0602c are separated by 43 nucleotides
Rv0598c: Rv0598c - Possible toxin VapC27. Contains PIN domain., at 697,154 to 697,567
Rv0598c
Rv0599c: Rv0599c - Possible antitoxin VapB27, at 697,564 to 697,800
Rv0599c
Rv0600c: Rv0600c - Two component sensor kinase [second part], at 697,904 to 698,410
Rv0600c
Rv0601c: Rv0601c - Two component sensor kinase [first part], at 698,524 to 698,994
Rv0601c
Rv0602c: Rv0602c - Two component DNA binding transcriptional regulatory protein TcrA, at 699,038 to 699,799
Rv0602c
Position (kb) 697
698
699 Strain fitness (log2 ratio) -1
0
1
2 at 696.914 kb on + strand at 697.270 kb on - strand, within Rv0598c at 697.366 kb on + strand, within Rv0598c at 697.432 kb on - strand, within Rv0598c at 697.708 kb on + strand, within Rv0599c at 697.806 kb on + strand at 697.905 kb on + strand at 697.916 kb on - strand at 698.596 kb on + strand, within Rv0601c at 699.147 kb on + strand, within Rv0602c at 699.156 kb on + strand, within Rv0602c at 699.187 kb on - strand, within Rv0602c
Per-strain Table
Position Strand Gene LocusTag Fraction no stress control remove 696,914 + -0.3 697,270 - Rv0598c 0.28 -0.0 697,366 + Rv0598c 0.51 -0.1 697,432 - Rv0598c 0.67 +2.0 697,708 + Rv0599c 0.61 -1.2 697,806 + -0.6 697,905 + -0.6 697,916 - -0.4 698,596 + Rv0601c 0.15 -0.2 699,147 + Rv0602c 0.14 -0.0 699,156 + Rv0602c 0.15 -0.5 699,187 - Rv0602c 0.20 -0.4
Or see this region's nucleotide sequence