Experiment: no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0547c and Rv0548c are separated by 95 nucleotides Rv0548c and Rv0549c are separated by 271 nucleotides Rv0549c and Rv0550c overlap by 4 nucleotides
Rv0547c: Rv0547c - Possible oxidoreductase, at 638,032 to 638,916
Rv0547c
Rv0548c: Rv0548c - Naphthoate synthase MenB (dihydroxynaphthoic acid synthetase) (DHNA synthetase), at 639,012 to 639,956
Rv0548c
Rv0549c: Rv0549c - Possible toxin VapC3, at 640,228 to 640,641
Rv0549c
Rv0550c: Rv0550c - Possible antitoxin VapB3, at 640,638 to 640,904
Rv0550c
Position (kb) 639
640 Strain fitness (log2 ratio) -1
0
1
2 at 638.210 kb on + strand, within Rv0547c at 638.210 kb on + strand, within Rv0547c at 638.211 kb on - strand, within Rv0547c at 638.255 kb on + strand, within Rv0547c at 638.256 kb on - strand, within Rv0547c at 638.256 kb on - strand, within Rv0547c at 638.256 kb on - strand, within Rv0547c at 638.400 kb on + strand, within Rv0547c at 638.462 kb on + strand, within Rv0547c at 638.462 kb on + strand, within Rv0547c at 638.463 kb on - strand, within Rv0547c at 638.463 kb on - strand, within Rv0547c at 638.465 kb on + strand, within Rv0547c at 638.465 kb on + strand, within Rv0547c at 638.465 kb on + strand, within Rv0547c at 638.465 kb on + strand, within Rv0547c at 638.465 kb on + strand, within Rv0547c at 638.466 kb on - strand, within Rv0547c at 638.697 kb on + strand, within Rv0547c at 638.930 kb on - strand at 638.930 kb on - strand at 638.947 kb on - strand at 638.947 kb on - strand at 638.990 kb on - strand at 639.013 kb on + strand at 639.020 kb on - strand at 639.992 kb on - strand at 640.023 kb on - strand at 640.178 kb on + strand at 640.179 kb on - strand at 640.179 kb on - strand at 640.436 kb on + strand, within Rv0549c at 640.437 kb on - strand, within Rv0549c at 640.576 kb on + strand, within Rv0549c at 640.837 kb on + strand, within Rv0550c at 640.838 kb on - strand, within Rv0550c
Per-strain Table
Position Strand Gene LocusTag Fraction no stress control remove 638,210 + Rv0547c 0.20 +2.0 638,210 + Rv0547c 0.20 -0.2 638,211 - Rv0547c 0.20 +0.0 638,255 + Rv0547c 0.25 +1.5 638,256 - Rv0547c 0.25 +0.2 638,256 - Rv0547c 0.25 -0.4 638,256 - Rv0547c 0.25 +0.5 638,400 + Rv0547c 0.42 +1.0 638,462 + Rv0547c 0.49 -0.3 638,462 + Rv0547c 0.49 +1.8 638,463 - Rv0547c 0.49 +0.0 638,463 - Rv0547c 0.49 +0.3 638,465 + Rv0547c 0.49 -0.3 638,465 + Rv0547c 0.49 -0.4 638,465 + Rv0547c 0.49 -0.3 638,465 + Rv0547c 0.49 -0.6 638,465 + Rv0547c 0.49 +0.0 638,466 - Rv0547c 0.49 -0.0 638,697 + Rv0547c 0.75 -0.6 638,930 - -0.2 638,930 - +0.4 638,947 - +0.1 638,947 - -0.6 638,990 - +1.1 639,013 + -0.0 639,020 - +0.1 639,992 - -1.0 640,023 - -1.3 640,178 + -0.1 640,179 - -0.6 640,179 - +0.2 640,436 + Rv0549c 0.50 +0.4 640,437 - Rv0549c 0.50 -0.1 640,576 + Rv0549c 0.84 +0.1 640,837 + Rv0550c 0.75 -0.8 640,838 - Rv0550c 0.75 -0.3
Or see this region's nucleotide sequence