Experiment: no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0522 and Rv0523c overlap by 17 nucleotides Rv0523c and Rv0524 are separated by 113 nucleotides Rv0524 and Rv0525 overlap by 1 nucleotides Rv0525 and Rv0526 are separated by 14 nucleotides
Rv0522: Rv0522 - Probable GABA permease GabP (4-amino butyrate transport carrier) (GAMA-aminobutyrate permease), at 613,038 to 614,342
Rv0522
Rv0523c: Rv0523c - Conserved protein, at 614,326 to 614,721
Rv0523c
Rv0524: Rv0524 - Probable glutamate-1-semialdehyde 2,1-aminomutase HemL (GSA) (glutamate-1-semialdehyde aminotransferase) (GSA-at), at 614,835 to 616,223
Rv0524
Rv0525: Rv0525 - Conserved protein, at 616,223 to 616,831
Rv0525
Rv0526: Rv0526 - Possible thioredoxin protein (thiol-disulfide interchange protein), at 616,846 to 617,496
Rv0526
Position (kb) 614
615
616
617 Strain fitness (log2 ratio) -1
0
1
2 at 613.884 kb on + strand, within Rv0522 at 613.884 kb on + strand, within Rv0522 at 613.884 kb on + strand, within Rv0522 at 613.884 kb on + strand, within Rv0522 at 613.885 kb on - strand, within Rv0522 at 613.885 kb on - strand, within Rv0522 at 613.885 kb on - strand, within Rv0522 at 613.885 kb on - strand, within Rv0522 at 613.885 kb on - strand, within Rv0522 at 614.156 kb on - strand, within Rv0522 at 614.295 kb on + strand at 614.296 kb on - strand at 614.296 kb on - strand at 614.348 kb on - strand at 614.402 kb on + strand, within Rv0523c at 614.403 kb on - strand, within Rv0523c at 614.684 kb on + strand at 614.685 kb on - strand at 614.685 kb on - strand at 614.713 kb on + strand at 614.827 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction no stress control remove 613,884 + Rv0522 0.65 -1.3 613,884 + Rv0522 0.65 -0.2 613,884 + Rv0522 0.65 +0.4 613,884 + Rv0522 0.65 +0.2 613,885 - Rv0522 0.65 -0.2 613,885 - Rv0522 0.65 -0.1 613,885 - Rv0522 0.65 -0.2 613,885 - Rv0522 0.65 +0.5 613,885 - Rv0522 0.65 -0.3 614,156 - Rv0522 0.86 +0.0 614,295 + -0.9 614,296 - -0.1 614,296 - +1.5 614,348 - +0.2 614,402 + Rv0523c 0.19 +1.8 614,403 - Rv0523c 0.19 -0.5 614,684 + -0.2 614,685 - +0.8 614,685 - +1.8 614,713 + +1.1 614,827 + -0.4
Or see this region's nucleotide sequence