Experiment: no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0477 and Rv0478 overlap by 1 nucleotides Rv0478 and Rv0479c are separated by 24 nucleotides Rv0479c and Rv0480c overlap by 4 nucleotides
Rv0477: Rv0477 - Possible conserved secreted protein, at 566,776 to 567,222
Rv0477
Rv0478: Rv0478 - Probable deoxyribose-phosphate aldolase DeoC (phosphodeoxyriboaldolase) (deoxyriboaldolase), at 567,222 to 567,896
Rv0478
Rv0479c: Rv0479c - Probable conserved membrane protein, at 567,921 to 568,967
Rv0479c
Rv0480c: Rv0480c - Possible amidohydrolase, at 568,964 to 569,806
Rv0480c
Position (kb) 567
568
569 Strain fitness (log2 ratio) -1
0
1
2 at 566.982 kb on + strand, within Rv0477 at 566.983 kb on - strand, within Rv0477 at 567.101 kb on - strand, within Rv0477 at 567.101 kb on - strand, within Rv0477 at 567.262 kb on + strand at 567.342 kb on + strand, within Rv0478 at 568.833 kb on - strand, within Rv0479c at 569.015 kb on + strand at 569.016 kb on - strand at 569.220 kb on + strand, within Rv0480c at 569.220 kb on + strand, within Rv0480c at 569.220 kb on + strand, within Rv0480c at 569.220 kb on + strand, within Rv0480c at 569.221 kb on - strand, within Rv0480c at 569.221 kb on - strand, within Rv0480c at 569.343 kb on + strand, within Rv0480c at 569.367 kb on + strand, within Rv0480c at 569.368 kb on - strand, within Rv0480c at 569.409 kb on - strand, within Rv0480c at 569.437 kb on + strand, within Rv0480c at 569.466 kb on + strand, within Rv0480c at 569.467 kb on - strand, within Rv0480c at 569.737 kb on - strand at 569.774 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction no stress control remove 566,982 + Rv0477 0.46 +0.3 566,983 - Rv0477 0.46 -0.4 567,101 - Rv0477 0.73 -0.8 567,101 - Rv0477 0.73 -0.1 567,262 + -0.4 567,342 + Rv0478 0.18 +1.8 568,833 - Rv0479c 0.87 +1.6 569,015 + -1.3 569,016 - +0.5 569,220 + Rv0480c 0.30 -0.1 569,220 + Rv0480c 0.30 -0.2 569,220 + Rv0480c 0.30 +1.0 569,220 + Rv0480c 0.30 +0.2 569,221 - Rv0480c 0.30 -0.7 569,221 - Rv0480c 0.30 +0.0 569,343 + Rv0480c 0.45 -0.6 569,367 + Rv0480c 0.48 -0.5 569,368 - Rv0480c 0.48 +1.2 569,409 - Rv0480c 0.53 +0.3 569,437 + Rv0480c 0.56 -1.3 569,466 + Rv0480c 0.60 +0.1 569,467 - Rv0480c 0.60 -0.2 569,737 - +0.3 569,774 - -1.3
Or see this region's nucleotide sequence