Experiment: no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0459 and Rv0460 are separated by 59 nucleotides Rv0460 and Rv0461 are separated by 37 nucleotides Rv0461 and Rv0462 are separated by 63 nucleotides Rv0462 and Rv0463 are separated by 7 nucleotides Rv0463 and Rv0464c are separated by 3 nucleotides Rv0464c and Rv0465c overlap by 4 nucleotides
Rv0459: Rv0459 - Conserved hypothetical protein, at 551,198 to 551,689
Rv0459
Rv0460: Rv0460 - Conserved hydrophobic protein, at 551,749 to 551,988
Rv0460
Rv0461: Rv0461 - Probable transmembrane protein, at 552,026 to 552,550
Rv0461
Rv0462: Rv0462 - Dihydrolipoamide dehydrogenase LpdC (lipoamide reductase (NADH)) (lipoyl dehydrogenase) (dihydrolipoyl dehydrogenase) (diaphorase), at 552,614 to 554,008
Rv0462
Rv0463: Rv0463 - Probable conserved membrane protein, at 554,016 to 554,309
Rv0463
Rv0464c: Rv0464c - Conserved protein, at 554,313 to 554,885
Rv0464c
Rv0465c: Rv0465c - Probable transcriptional regulatory protein, at 554,882 to 556,306
Rv0465c
Position (kb) 552
553
554
555 Strain fitness (log2 ratio) -1
0
1
2 at 551.616 kb on + strand, within Rv0459 at 551.617 kb on - strand, within Rv0459 at 551.696 kb on + strand at 551.697 kb on - strand at 551.704 kb on + strand at 551.705 kb on - strand at 551.844 kb on - strand, within Rv0460 at 551.844 kb on - strand, within Rv0460 at 552.217 kb on - strand, within Rv0461 at 552.228 kb on - strand, within Rv0461 at 552.230 kb on - strand, within Rv0461 at 552.230 kb on - strand, within Rv0461 at 552.230 kb on - strand, within Rv0461 at 552.234 kb on - strand, within Rv0461 at 552.234 kb on - strand, within Rv0461 at 552.234 kb on - strand, within Rv0461 at 552.258 kb on + strand, within Rv0461 at 552.273 kb on + strand, within Rv0461 at 552.273 kb on + strand, within Rv0461 at 552.320 kb on + strand, within Rv0461 at 552.365 kb on + strand, within Rv0461 at 552.366 kb on - strand, within Rv0461 at 552.500 kb on + strand at 552.500 kb on + strand at 552.500 kb on + strand at 552.500 kb on + strand at 552.500 kb on + strand at 552.501 kb on - strand at 552.501 kb on - strand at 552.545 kb on + strand at 552.546 kb on - strand at 552.546 kb on - strand at 552.548 kb on + strand at 552.570 kb on + strand at 554.085 kb on + strand, within Rv0463 at 554.085 kb on + strand, within Rv0463 at 554.085 kb on + strand, within Rv0463 at 554.086 kb on - strand, within Rv0463 at 554.159 kb on - strand, within Rv0463 at 554.159 kb on - strand, within Rv0463 at 554.301 kb on + strand at 554.314 kb on + strand at 554.315 kb on - strand at 554.315 kb on - strand at 554.487 kb on + strand, within Rv0464c at 554.584 kb on - strand, within Rv0464c at 554.641 kb on - strand, within Rv0464c at 554.713 kb on + strand, within Rv0464c at 554.713 kb on + strand, within Rv0464c at 554.737 kb on + strand, within Rv0464c at 554.737 kb on + strand, within Rv0464c at 554.738 kb on - strand, within Rv0464c at 554.885 kb on + strand at 554.885 kb on + strand at 554.886 kb on - strand at 554.886 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction no stress control remove 551,616 + Rv0459 0.85 +0.5 551,617 - Rv0459 0.85 -0.4 551,696 + -0.2 551,697 - +0.4 551,704 + -0.3 551,705 - +0.4 551,844 - Rv0460 0.40 -0.1 551,844 - Rv0460 0.40 -0.7 552,217 - Rv0461 0.36 -0.8 552,228 - Rv0461 0.38 +0.8 552,230 - Rv0461 0.39 -0.2 552,230 - Rv0461 0.39 -0.0 552,230 - Rv0461 0.39 -0.1 552,234 - Rv0461 0.40 +0.2 552,234 - Rv0461 0.40 +0.2 552,234 - Rv0461 0.40 -0.6 552,258 + Rv0461 0.44 -0.1 552,273 + Rv0461 0.47 -0.2 552,273 + Rv0461 0.47 -0.5 552,320 + Rv0461 0.56 +0.2 552,365 + Rv0461 0.65 -0.1 552,366 - Rv0461 0.65 -0.1 552,500 + +1.1 552,500 + -0.1 552,500 + +0.4 552,500 + -1.2 552,500 + -0.5 552,501 - -1.0 552,501 - -0.4 552,545 + -0.4 552,546 - +0.1 552,546 - +0.1 552,548 + -0.7 552,570 + -0.3 554,085 + Rv0463 0.23 -0.3 554,085 + Rv0463 0.23 -0.8 554,085 + Rv0463 0.23 +0.8 554,086 - Rv0463 0.24 +0.7 554,159 - Rv0463 0.49 +0.2 554,159 - Rv0463 0.49 -0.2 554,301 + +0.6 554,314 + +0.0 554,315 - +0.8 554,315 - -0.0 554,487 + Rv0464c 0.30 -0.1 554,584 - Rv0464c 0.47 -0.4 554,641 - Rv0464c 0.57 +1.8 554,713 + Rv0464c 0.70 -0.0 554,713 + Rv0464c 0.70 +0.3 554,737 + Rv0464c 0.74 -0.5 554,737 + Rv0464c 0.74 -0.2 554,738 - Rv0464c 0.74 -0.5 554,885 + +0.5 554,885 + -0.3 554,886 - +0.1 554,886 - -0.1
Or see this region's nucleotide sequence