Experiment: no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0350 and Rv0351 overlap by 4 nucleotides Rv0351 and Rv0352 are separated by 35 nucleotides Rv0352 and Rv0353 overlap by 1 nucleotides Rv0353 and Rv0354c are separated by 249 nucleotides
Rv0350: Rv0350 - Probable chaperone protein DnaK (heat shock protein 70) (heat shock 70 kDa protein) (HSP70), at 419,835 to 421,712
Rv0350
Rv0351: Rv0351 - Probable GrpE protein (HSP-70 cofactor), at 421,709 to 422,416
Rv0351
Rv0352: Rv0352 - Probable chaperone protein DnaJ1, at 422,452 to 423,639
Rv0352
Rv0353: Rv0353 - Probable heat shock protein transcriptional repressor HspR (MerR family), at 423,639 to 424,019
Rv0353
Rv0354c: Rv0354c - PPE family protein PPE7, at 424,269 to 424,694
Rv0354c
Position (kb) 422
423
424 Strain fitness (log2 ratio) -2
-1
0
1
2 at 422.414 kb on + strand at 423.631 kb on - strand at 423.728 kb on + strand, within Rv0353 at 423.728 kb on + strand, within Rv0353 at 423.728 kb on + strand, within Rv0353 at 423.732 kb on + strand, within Rv0353 at 423.732 kb on + strand, within Rv0353 at 423.733 kb on - strand, within Rv0353 at 423.733 kb on - strand, within Rv0353 at 424.031 kb on + strand at 424.263 kb on + strand at 424.263 kb on + strand at 424.264 kb on - strand at 424.264 kb on - strand at 424.270 kb on + strand at 424.271 kb on - strand at 424.604 kb on - strand, within Rv0354c at 424.632 kb on + strand, within Rv0354c at 424.632 kb on + strand, within Rv0354c at 424.632 kb on + strand, within Rv0354c
Per-strain Table
Position Strand Gene LocusTag Fraction no stress control remove 422,414 + -0.2 423,631 - -0.3 423,728 + Rv0353 0.23 -1.1 423,728 + Rv0353 0.23 -1.5 423,728 + Rv0353 0.23 -0.6 423,732 + Rv0353 0.24 -0.7 423,732 + Rv0353 0.24 -2.6 423,733 - Rv0353 0.25 -1.0 423,733 - Rv0353 0.25 -0.3 424,031 + +0.1 424,263 + -0.3 424,263 + -0.3 424,264 - -0.2 424,264 - -0.2 424,270 + +1.8 424,271 - +0.8 424,604 - Rv0354c 0.79 -0.6 424,632 + Rv0354c 0.85 +0.1 424,632 + Rv0354c 0.85 -0.7 424,632 + Rv0354c 0.85 -0.5
Or see this region's nucleotide sequence