Experiment: no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0058 and Rv0059 are separated by 179 nucleotides Rv0059 and Rv0060 are separated by 16 nucleotides Rv0060 and Rv0061c are separated by 44 nucleotides Rv0061c and Rv0062 are separated by 201 nucleotides
Rv0058: Rv0058 - Probable replicative DNA helicase DnaB, at 60,396 to 63,020
Rv0058
Rv0059: Rv0059 - Hypothetical protein, at 63,200 to 63,892
Rv0059
Rv0060: Rv0060 - Conserved hypothetical protein, at 63,909 to 64,967
Rv0060
Rv0061c: Rv0061c - Hypothetical protein, at 65,012 to 65,350
Rv0061c
Rv0062: Rv0062 - Possible cellulase CelA1 (endoglucanase) (endo-1,4-beta-glucanase) (FI-cmcase) (carboxymethyl cellulase), at 65,552 to 66,694
Rv0062
Position (kb) 63
64
65 Strain fitness (log2 ratio) -2
-1
0
1
2 at 63.377 kb on + strand, within Rv0059 at 63.377 kb on + strand, within Rv0059 at 63.378 kb on - strand, within Rv0059 at 63.378 kb on - strand, within Rv0059 at 63.378 kb on - strand, within Rv0059 at 63.378 kb on - strand, within Rv0059 at 63.378 kb on - strand, within Rv0059 at 63.379 kb on + strand, within Rv0059 at 63.379 kb on + strand, within Rv0059 at 63.379 kb on + strand, within Rv0059 at 63.380 kb on - strand, within Rv0059 at 63.432 kb on - strand, within Rv0059 at 63.467 kb on + strand, within Rv0059 at 63.468 kb on - strand, within Rv0059 at 63.494 kb on + strand, within Rv0059 at 63.494 kb on + strand, within Rv0059 at 63.502 kb on - strand, within Rv0059 at 63.576 kb on + strand, within Rv0059 at 63.576 kb on + strand, within Rv0059 at 63.626 kb on + strand, within Rv0059 at 63.757 kb on - strand, within Rv0059 at 63.758 kb on + strand, within Rv0059 at 63.758 kb on + strand, within Rv0059 at 63.759 kb on - strand, within Rv0059 at 63.788 kb on + strand, within Rv0059 at 63.789 kb on - strand, within Rv0059 at 63.800 kb on + strand, within Rv0059 at 63.800 kb on + strand, within Rv0059 at 63.801 kb on - strand, within Rv0059 at 63.801 kb on - strand, within Rv0059 at 63.801 kb on - strand, within Rv0059 at 63.864 kb on - strand at 63.864 kb on - strand at 63.884 kb on + strand at 63.885 kb on - strand at 63.885 kb on - strand at 63.887 kb on + strand at 63.888 kb on - strand at 63.888 kb on - strand at 63.888 kb on - strand at 63.888 kb on - strand at 63.888 kb on - strand at 63.888 kb on - strand at 63.890 kb on + strand at 63.908 kb on + strand at 63.908 kb on + strand at 63.908 kb on + strand at 64.955 kb on + strand at 64.955 kb on + strand at 65.435 kb on - strand at 65.500 kb on + strand at 65.501 kb on - strand at 65.549 kb on + strand at 65.549 kb on + strand at 65.549 kb on + strand at 65.549 kb on + strand at 65.549 kb on + strand at 65.549 kb on + strand at 65.550 kb on - strand at 65.550 kb on - strand at 65.550 kb on - strand at 65.550 kb on - strand at 65.550 kb on - strand at 65.551 kb on + strand at 65.551 kb on + strand at 65.666 kb on + strand at 65.692 kb on + strand, within Rv0062 at 65.716 kb on - strand, within Rv0062 at 65.840 kb on + strand, within Rv0062 at 65.841 kb on - strand, within Rv0062 at 65.933 kb on + strand, within Rv0062
Per-strain Table
Position Strand Gene LocusTag Fraction no stress control remove 63,377 + Rv0059 0.26 -0.0 63,377 + Rv0059 0.26 +0.9 63,378 - Rv0059 0.26 +1.0 63,378 - Rv0059 0.26 +0.0 63,378 - Rv0059 0.26 -0.5 63,378 - Rv0059 0.26 -0.4 63,378 - Rv0059 0.26 -0.3 63,379 + Rv0059 0.26 -0.1 63,379 + Rv0059 0.26 +0.2 63,379 + Rv0059 0.26 -0.1 63,380 - Rv0059 0.26 -0.5 63,432 - Rv0059 0.33 +0.1 63,467 + Rv0059 0.39 -1.0 63,468 - Rv0059 0.39 -0.3 63,494 + Rv0059 0.42 +0.3 63,494 + Rv0059 0.42 -0.1 63,502 - Rv0059 0.44 -0.0 63,576 + Rv0059 0.54 +1.9 63,576 + Rv0059 0.54 -1.0 63,626 + Rv0059 0.61 +0.3 63,757 - Rv0059 0.80 -0.1 63,758 + Rv0059 0.81 -0.2 63,758 + Rv0059 0.81 -0.7 63,759 - Rv0059 0.81 +0.2 63,788 + Rv0059 0.85 +0.1 63,789 - Rv0059 0.85 -0.5 63,800 + Rv0059 0.87 +0.3 63,800 + Rv0059 0.87 -0.3 63,801 - Rv0059 0.87 +0.8 63,801 - Rv0059 0.87 +1.0 63,801 - Rv0059 0.87 -1.1 63,864 - +1.9 63,864 - -0.1 63,884 + +1.1 63,885 - -0.8 63,885 - +0.2 63,887 + -0.1 63,888 - -2.2 63,888 - +0.5 63,888 - -0.6 63,888 - +0.0 63,888 - +0.4 63,888 - +0.1 63,890 + +1.1 63,908 + -0.3 63,908 + -0.2 63,908 + -0.2 64,955 + +0.1 64,955 + -1.6 65,435 - +0.7 65,500 + -1.9 65,501 - -0.4 65,549 + -0.1 65,549 + -0.1 65,549 + -1.1 65,549 + -0.6 65,549 + -0.2 65,549 + -0.4 65,550 - -0.1 65,550 - -0.4 65,550 - -0.1 65,550 - -0.4 65,550 - -0.5 65,551 + -0.4 65,551 + +0.5 65,666 + -0.6 65,692 + Rv0062 0.12 -2.2 65,716 - Rv0062 0.14 +0.7 65,840 + Rv0062 0.25 -0.3 65,841 - Rv0062 0.25 -2.5 65,933 + Rv0062 0.33 -0.3
Or see this region's nucleotide sequence