Strain Fitness in Mycobacterium tuberculosis H37Rv around GFF789

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRv0755c and Rv0755A are separated by 301 nucleotidesRv0755A and GFF789 are separated by 114 nucleotidesGFF789 and Rv0756c are separated by 27 nucleotidesRv0756c and Rv0757 are separated by 141 nucleotides Rv0755c: Rv0755c - PPE family protein PPE12, at 848,103 to 850,040 Rv0755c Rv0755A: Rv0755A - Putative transposase (fragment), at 850,342 to 850,527 Rv0755A GFF789 - tRNA-Thr, at 850,642 to 850,713 GFF789 Rv0756c: Rv0756c - Unknown protein, at 850,741 to 851,466 Rv0756c Rv0757: Rv0757 - Possible two component system response transcriptional positive regulator PhoP, at 851,608 to 852,351 Rv0757 Position (kb) 850 851Strain fitness (log2 ratio) -1 0 1 2at 849.824 kb on - strand, within Rv0755cat 849.966 kb on + strandat 849.991 kb on + strandat 849.991 kb on + strandat 849.992 kb on - strandat 850.084 kb on + strandat 850.085 kb on - strandat 850.088 kb on + strandat 850.088 kb on + strandat 850.088 kb on + strandat 850.088 kb on + strandat 850.089 kb on - strandat 850.089 kb on - strandat 850.089 kb on - strandat 850.115 kb on + strandat 850.343 kb on + strandat 850.344 kb on - strandat 850.344 kb on - strandat 850.344 kb on - strandat 850.345 kb on + strandat 850.345 kb on + strandat 850.345 kb on + strandat 850.345 kb on + strandat 850.346 kb on - strandat 850.346 kb on - strandat 850.346 kb on - strandat 850.346 kb on - strandat 850.346 kb on - strandat 850.346 kb on - strandat 850.346 kb on - strandat 850.346 kb on - strandat 850.346 kb on - strandat 850.369 kb on + strand, within Rv0755Aat 850.369 kb on + strand, within Rv0755Aat 850.369 kb on + strand, within Rv0755Aat 850.395 kb on - strand, within Rv0755Aat 850.410 kb on + strand, within Rv0755Aat 850.410 kb on + strand, within Rv0755Aat 850.410 kb on + strand, within Rv0755Aat 850.411 kb on - strand, within Rv0755Aat 850.497 kb on - strand, within Rv0755Aat 850.625 kb on + strandat 850.628 kb on + strandat 850.628 kb on + strandat 850.628 kb on + strandat 850.629 kb on - strandat 850.629 kb on - strandat 850.629 kb on - strandat 850.860 kb on + strand, within Rv0756cat 850.860 kb on + strand, within Rv0756cat 850.861 kb on - strand, within Rv0756cat 850.985 kb on - strand, within Rv0756cat 851.055 kb on + strand, within Rv0756cat 851.055 kb on + strand, within Rv0756cat 851.241 kb on + strand, within Rv0756cat 851.242 kb on - strand, within Rv0756cat 851.477 kb on + strandat 851.478 kb on - strandat 851.577 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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849,824 - Rv0755c 0.89 -0.5
849,966 + -0.0
849,991 + +0.0
849,991 + -0.6
849,992 - +0.1
850,084 + +0.0
850,085 - -0.3
850,088 + -0.3
850,088 + -1.2
850,088 + +0.2
850,088 + -0.6
850,089 - +0.3
850,089 - -0.5
850,089 - +2.5
850,115 + -0.0
850,343 + -0.5
850,344 - -0.4
850,344 - +1.8
850,344 - -0.1
850,345 + +0.5
850,345 + -0.3
850,345 + -0.1
850,345 + -0.7
850,346 - -0.5
850,346 - -0.0
850,346 - -0.1
850,346 - -0.3
850,346 - -1.0
850,346 - -0.5
850,346 - -0.3
850,346 - -0.5
850,346 - -0.4
850,369 + Rv0755A 0.15 +0.3
850,369 + Rv0755A 0.15 -1.0
850,369 + Rv0755A 0.15 -0.5
850,395 - Rv0755A 0.28 -0.7
850,410 + Rv0755A 0.37 -0.3
850,410 + Rv0755A 0.37 -0.9
850,410 + Rv0755A 0.37 +1.1
850,411 - Rv0755A 0.37 -0.7
850,497 - Rv0755A 0.83 +0.7
850,625 + -0.3
850,628 + -0.5
850,628 + +0.1
850,628 + -0.4
850,629 - +0.5
850,629 - -0.0
850,629 - -0.8
850,860 + Rv0756c 0.16 -0.7
850,860 + Rv0756c 0.16 +0.3
850,861 - Rv0756c 0.17 -1.6
850,985 - Rv0756c 0.34 +0.1
851,055 + Rv0756c 0.43 -0.4
851,055 + Rv0756c 0.43 -0.6
851,241 + Rv0756c 0.69 +0.8
851,242 - Rv0756c 0.69 +0.3
851,477 + -0.2
851,478 - -1.1
851,577 - -1.4

Or see this region's nucleotide sequence